RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 FSTL4Q6MZW2 842 aa12.7□□□□□ -0.38
SQSTM1-206ENST00000466342 C11orf74Q86VG3 221 aa12.7□□□□□ -0.38
SQSTM1-206ENST00000466342 HNRNPLLQ8WVV9 542 aaKnown RBP12.7□□□□□ -0.38
SQSTM1-206ENST00000466342 PGLYRP2Q96PD5 576 aa12.7□□□□□ -0.38
SQSTM1-206ENST00000466342 HHIPQ96QV1 700 aa12.7□□□□□ -0.38
SQSTM1-206ENST00000466342 SRRTQ9BXP5 876 aaKnown RBP12.7□□□□□ -0.38
SQSTM1-206ENST00000466342 POLR3BQ9NW08 1133 aaPredicted RBP12.7□□□□□ -0.38
SQSTM1-206ENST00000466342 YIPF1Q9Y548 306 aa12.7□□□□□ -0.38
SQSTM1-206ENST00000466342 DENND4CQ5VZ89 1909 aa12.7□□□□□ -0.38
SQSTM1-206ENST00000466342 CACNA1EQ15878 2313 aa12.7□□□□□ -0.38
SQSTM1-206ENST00000466342 A0A1W2PRU2 124 aa12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 MTMR11A4FU01 709 aa12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 UPK3BL1B0FP48 263 aa12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 UPK3BL2E5RIL1 263 aa12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 TRDMT1O14717 391 aaKnown RBP12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 STX10O60499 249 aa12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 PHACTR2O75167 634 aa12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 STAU1O95793 577 aaKnown RBP12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 CST3P01034 146 aaPredicted RBP12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 GTF2H1P32780 548 aa12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 TUFMP49411 452 aaKnown RBP12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 MARSP56192 900 aaKnown RBP12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 TYRO3Q06418 890 aa12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 PPP3CAQ08209 521 aa12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 C19orf57Q0VDD7 668 aa12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 LMAN2Q12907 356 aa12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 TRPC3Q13507 836 aa12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 TPD52L1Q16890 204 aaPredicted RBP12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 DCAF17Q5H9S7 520 aaPredicted RBP12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 TCERG1LQ5VWI1 586 aa12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 C11orf57Q6ZUT1 292 aaPredicted RBP12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 SV2AQ7L0J3 742 aa12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 PIP4P1Q86T03 277 aa12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 ATAD1Q8NBU5 361 aa12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 C2orf15Q8WU43 125 aaKnown RBP12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 SLC35C1Q96A29 364 aa12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 HPDLQ96IR7 371 aa12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 LRIG1Q96JA1 1093 aa12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 LRRC3Q9BY71 257 aa12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 ZCWPW1Q9H0M4 648 aa12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 CRISPLD1Q9H336 500 aa12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 TMEM8AQ9HCN3 771 aa12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 GDAP2Q9NXN4 497 aa12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 EVLQ9UI08 416 aaPredicted RBP12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 PTPRBP23467 1997 aa12.69□□□□□ -0.38
SQSTM1-206ENST00000466342 RNF40O75150 1001 aa12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 VNN1O95497 513 aa12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 APBB3O95704 486 aa12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 ATICP31939 592 aa12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 PIK3CAP42336 1068 aa12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 GCLMP48507 274 aa12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 MXI1P50539 228 aa12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 MYL6P60660 151 aa12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 SEMA3BQ13214 749 aa12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 NCOA4Q13772 614 aa12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 USP39Q53GS9 565 aaKnown RBP12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 WSCD1Q658N2 575 aa12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 KRT39Q6A163 491 aa12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 SYT13Q7L8C5 426 aa12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 CYP2U1Q7Z449 544 aa12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 RAB44Q7Z6P3 723 aaPredicted RBP12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 ITIH5Q86UX2 942 aa12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 TRIM59Q8IWR1 403 aa12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 OR10T2Q8NGX3 314 aa12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 ENOX1Q8TC92 643 aaKnown RBP12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 SPPL2BQ8TCT7 592 aa12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 BPIFB1Q8TDL5 484 aa12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 NUSAP1Q9BXS6 441 aaKnown RBP12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 DNAJC25Q9H1X3 360 aa12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 THAP9Q9H5L6 903 aa12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 CCDC86Q9H6F5 360 aaKnown RBP12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 MMRN2Q9H8L6 949 aa12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 VRTNQ9H8Y1 702 aa12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 THG1LQ9NWX6 298 aaKnown RBP12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 INVSQ9Y283 1065 aa12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 SLC27A5Q9Y2P5 690 aa12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 SNX9Q9Y5X1 595 aa12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 ACACAQ13085 2346 aa12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 NAV2Q8IVL1 2488 aa12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 ASXL3Q9C0F0 2248 aa12.68□□□□□ -0.38
SQSTM1-206ENST00000466342 SYCE3A1L190 88 aa12.67□□□□□ -0.38
SQSTM1-206ENST00000466342 CYSRT1A8MQ03 144 aa12.67□□□□□ -0.38
SQSTM1-206ENST00000466342 HUS1O60921 280 aa12.67□□□□□ -0.38
SQSTM1-206ENST00000466342 FGF19O95750 216 aa12.67□□□□□ -0.38
SQSTM1-206ENST00000466342 EGFP01133 1207 aa12.67□□□□□ -0.38
SQSTM1-206ENST00000466342 HLA-DRAP01903 254 aa12.67□□□□□ -0.38
SQSTM1-206ENST00000466342 DGKEP52429 567 aa12.67□□□□□ -0.38
SQSTM1-206ENST00000466342 ZNF423Q2M1K9 1284 aa12.67□□□□□ -0.38
SQSTM1-206ENST00000466342 SLC39A12Q504Y0 691 aa12.67□□□□□ -0.38
SQSTM1-206ENST00000466342 STXBP5Q5T5C0 1151 aa12.67□□□□□ -0.38
SQSTM1-206ENST00000466342 DPH6Q7L8W6 267 aa12.67□□□□□ -0.38
SQSTM1-206ENST00000466342 DNAJB7Q7Z6W7 309 aaPredicted RBP12.67□□□□□ -0.38
SQSTM1-206ENST00000466342 TMC8Q8IU68 726 aa12.67□□□□□ -0.38
SQSTM1-206ENST00000466342 IRF2BP1Q8IU81 584 aa12.67□□□□□ -0.38
SQSTM1-206ENST00000466342 FAM114A1Q8IWE2 563 aa12.67□□□□□ -0.38
SQSTM1-206ENST00000466342 DCP1BQ8IZD4 617 aaKnown RBP12.67□□□□□ -0.38
SQSTM1-206ENST00000466342 TMEM86AQ8N2M4 240 aa12.67□□□□□ -0.38
SQSTM1-206ENST00000466342 TOP6BLQ8N6T0 577 aa12.67□□□□□ -0.38
SQSTM1-206ENST00000466342 SPATA18Q8TC71 538 aa12.67□□□□□ -0.38
SQSTM1-206ENST00000466342 PIGKQ92643 395 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms