RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 PLCB1Q9NQ66 1216 aa12.3□□□□□ -0.44
CUX1-207ENST00000465461 RTN4Q9NQC3 1192 aaKnown RBP12.3□□□□□ -0.44
CUX1-207ENST00000465461 NUDT5Q9UKK9 219 aa12.3□□□□□ -0.44
CUX1-207ENST00000465461 CA14Q9ULX7 337 aa12.3□□□□□ -0.44
CUX1-207ENST00000465461 TTC28Q96AY4 2481 aa12.3□□□□□ -0.44
CUX1-207ENST00000465461 MYO16Q9Y6X6 1858 aa12.29□□□□□ -0.44
CUX1-207ENST00000465461 TRAV19A0A0A6YYK7 116 aa12.29□□□□□ -0.44
CUX1-207ENST00000465461 FAM92AA1XBS5 289 aa12.29□□□□□ -0.44
CUX1-207ENST00000465461 DPYSL4O14531 572 aa12.29□□□□□ -0.44
CUX1-207ENST00000465461 XPO1O14980 1071 aaKnown RBP12.29□□□□□ -0.44
CUX1-207ENST00000465461 TBX18O95935 607 aa12.29□□□□□ -0.44
CUX1-207ENST00000465461 SERPINC1P01008 464 aa12.29□□□□□ -0.44
CUX1-207ENST00000465461 CKMP06732 381 aa12.29□□□□□ -0.44
CUX1-207ENST00000465461 SRFP11831 508 aa12.29□□□□□ -0.44
CUX1-207ENST00000465461 DDX6P26196 483 aaKnown RBP eCLIP12.29□□□□□ -0.44
CUX1-207ENST00000465461 GDI1P31150 447 aa12.29□□□□□ -0.44
CUX1-207ENST00000465461 TKTL1P51854 596 aa12.29□□□□□ -0.44
CUX1-207ENST00000465461 BCAT1P54687 386 aa12.29□□□□□ -0.44
CUX1-207ENST00000465461 SIGLEC14Q08ET2 396 aa12.29□□□□□ -0.44
CUX1-207ENST00000465461 RAB41Q5JT25 222 aa12.29□□□□□ -0.44
CUX1-207ENST00000465461 PMF1Q6P1K2 205 aa12.29□□□□□ -0.44
CUX1-207ENST00000465461 LRSAM1Q6UWE0 723 aa12.29□□□□□ -0.44
CUX1-207ENST00000465461 SCD5Q86SK9 330 aa12.29□□□□□ -0.44
CUX1-207ENST00000465461 PASD1Q8IV76 773 aa12.29□□□□□ -0.44
CUX1-207ENST00000465461 FAM71AQ8IYT1 594 aa12.29□□□□□ -0.44
CUX1-207ENST00000465461 RNF214Q8ND24 703 aa12.29□□□□□ -0.44
CUX1-207ENST00000465461 SLC35F5Q8WV83 523 aa12.29□□□□□ -0.44
CUX1-207ENST00000465461 ASIC4Q96FT7 647 aa12.29□□□□□ -0.44
CUX1-207ENST00000465461 FAM81BQ96LP2 452 aa12.29□□□□□ -0.44
CUX1-207ENST00000465461 ULBP1Q9BZM6 244 aa12.29□□□□□ -0.44
CUX1-207ENST00000465461 FBXO44Q9H4M3 255 aa12.29□□□□□ -0.44
CUX1-207ENST00000465461 TRPV4Q9HBA0 871 aa12.29□□□□□ -0.44
CUX1-207ENST00000465461 TDP1Q9NUW8 608 aa12.29□□□□□ -0.44
CUX1-207ENST00000465461 COMMD8Q9NX08 183 aa12.29□□□□□ -0.44
CUX1-207ENST00000465461 SMPD4Q9NXE4 827 aa12.29□□□□□ -0.44
CUX1-207ENST00000465461 EHD2Q9NZN4 543 aa12.29□□□□□ -0.44
CUX1-207ENST00000465461 CYTH4Q9UIA0 394 aa12.29□□□□□ -0.44
CUX1-207ENST00000465461 FBXL21Q9UKT6 434 aa12.29□□□□□ -0.44
CUX1-207ENST00000465461 SCML2Q9UQR0 700 aa12.29□□□□□ -0.44
CUX1-207ENST00000465461 USP3Q9Y6I4 520 aa12.29□□□□□ -0.44
CUX1-207ENST00000465461 NUP210Q8TEM1 1887 aaPredicted RBP12.28□□□□□ -0.44
CUX1-207ENST00000465461 KRBA1A5PL33 1030 aa12.28□□□□□ -0.44
CUX1-207ENST00000465461 TMEM221A6NGB7 291 aa12.28□□□□□ -0.44
CUX1-207ENST00000465461 GOLGA6L19H0YKK7 550 aa12.28□□□□□ -0.44
CUX1-207ENST00000465461 M0R296 226 aa12.28□□□□□ -0.44
CUX1-207ENST00000465461 MDM4O15151 490 aa12.28□□□□□ -0.44
CUX1-207ENST00000465461 COCHO43405 550 aa12.28□□□□□ -0.44
CUX1-207ENST00000465461 GFPT2O94808 682 aa12.28□□□□□ -0.44
CUX1-207ENST00000465461 OAS1P00973 400 aaKnown RBP12.28□□□□□ -0.44
CUX1-207ENST00000465461 ZDHHC11BP0C7U3 371 aa12.28□□□□□ -0.44
CUX1-207ENST00000465461 MBL2P11226 248 aaPredicted RBP12.28□□□□□ -0.44
CUX1-207ENST00000465461 PSMC3P17980 439 aa12.28□□□□□ -0.44
CUX1-207ENST00000465461 KCNA4P22459 653 aa12.28□□□□□ -0.44
CUX1-207ENST00000465461 GPD2P43304 727 aa12.28□□□□□ -0.44
CUX1-207ENST00000465461 PLA2G4AP47712 749 aa12.28□□□□□ -0.44
CUX1-207ENST00000465461 SLC8A3P57103 927 aa12.28□□□□□ -0.44
CUX1-207ENST00000465461 FANCCQ00597 558 aa12.28□□□□□ -0.44
CUX1-207ENST00000465461 PTK2Q05397 1052 aa12.28□□□□□ -0.44
CUX1-207ENST00000465461 ADIGQ0VDE8 80 aa12.28□□□□□ -0.44
CUX1-207ENST00000465461 TAF3Q5VWG9 929 aa12.28□□□□□ -0.44
CUX1-207ENST00000465461 TRIM68Q6AZZ1 485 aa12.28□□□□□ -0.44
CUX1-207ENST00000465461 MFSD6LQ8IWD5 586 aa12.28□□□□□ -0.44
CUX1-207ENST00000465461 UBALD2Q8IYN6 164 aa12.28□□□□□ -0.44
CUX1-207ENST00000465461 SIX5Q8N196 739 aa12.28□□□□□ -0.44
CUX1-207ENST00000465461 CELF5Q8N6W0 485 aaKnown RBP12.28□□□□□ -0.44
CUX1-207ENST00000465461 NEK11Q8NG66 645 aa12.28□□□□□ -0.44
CUX1-207ENST00000465461 BPIFB1Q8TDL5 484 aa12.28□□□□□ -0.44
CUX1-207ENST00000465461 CLEC4CQ8WTT0 213 aa12.28□□□□□ -0.44
CUX1-207ENST00000465461 WBP2Q969T9 261 aa12.28□□□□□ -0.44
CUX1-207ENST00000465461 ERGIC2Q96RQ1 377 aa12.28□□□□□ -0.44
CUX1-207ENST00000465461 TRMT61BQ9BVS5 477 aaKnown RBP12.28□□□□□ -0.44
CUX1-207ENST00000465461 STK33Q9BYT3 514 aa12.28□□□□□ -0.44
CUX1-207ENST00000465461 UBXN6Q9BZV1 441 aa12.28□□□□□ -0.44
CUX1-207ENST00000465461 BRD9Q9H8M2 597 aa12.28□□□□□ -0.44
CUX1-207ENST00000465461 LRRC4Q9HBW1 653 aa12.28□□□□□ -0.44
CUX1-207ENST00000465461 PNPLA8Q9NP80 782 aa12.28□□□□□ -0.44
CUX1-207ENST00000465461 TJP2Q9UDY2 1190 aa12.28□□□□□ -0.44
CUX1-207ENST00000465461 CPQQ9Y646 472 aa12.28□□□□□ -0.44
CUX1-207ENST00000465461 A0A1B0GTH6 734 aa12.27□□□□□ -0.45
CUX1-207ENST00000465461 F8VZ95 297 aa12.27□□□□□ -0.45
CUX1-207ENST00000465461 ZNF263O14978 683 aa12.27□□□□□ -0.45
CUX1-207ENST00000465461 MED7O43513 233 aa12.27□□□□□ -0.45
CUX1-207ENST00000465461 SETSIPP0DME0 302 aa12.27□□□□□ -0.45
CUX1-207ENST00000465461 RARGP13631 454 aa12.27□□□□□ -0.45
CUX1-207ENST00000465461 WEE1P30291 646 aa12.27□□□□□ -0.45
CUX1-207ENST00000465461 PPP3CCP48454 512 aa12.27□□□□□ -0.45
CUX1-207ENST00000465461 TPM4P67936 248 aa12.27□□□□□ -0.45
CUX1-207ENST00000465461 TNK2Q07912 1038 aa12.27□□□□□ -0.45
CUX1-207ENST00000465461 NR1I3Q14994 352 aa12.27□□□□□ -0.45
CUX1-207ENST00000465461 FILIP1LQ4L180 1135 aa12.27□□□□□ -0.45
CUX1-207ENST00000465461 HECTD3Q5T447 861 aa12.27□□□□□ -0.45
CUX1-207ENST00000465461 HFE2Q6ZVN8 426 aa12.27□□□□□ -0.45
CUX1-207ENST00000465461 BHLHA9Q7RTU4 235 aa12.27□□□□□ -0.45
CUX1-207ENST00000465461 YAF2Q8IY57 180 aa12.27□□□□□ -0.45
CUX1-207ENST00000465461 WDTC1Q8N5D0 677 aa12.27□□□□□ -0.45
CUX1-207ENST00000465461 PDZD8Q8NEN9 1154 aa12.27□□□□□ -0.45
CUX1-207ENST00000465461 SH3RF2Q8TEC5 729 aa12.27□□□□□ -0.45
CUX1-207ENST00000465461 OVCA2Q8WZ82 227 aa12.27□□□□□ -0.45
CUX1-207ENST00000465461 MIS12Q9H081 205 aa12.27□□□□□ -0.45
CUX1-207ENST00000465461 SLC2A4RGQ9NR83 387 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms