RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 PCNTO95613 3336 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 COL5A3P25940 1745 aaPredicted RBP5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 KDM6AO15550 1401 aaPredicted RBP5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 ABHD14A-ACY1A0A1B0GW23 586 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 SLC9B1P1A6NJY1 282 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 NEURL1BA8MQ27 555 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 K7ESF4 209 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 FANCGO15287 622 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 FOXN1O15353 648 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 POLR2DO15514 142 aaKnown RBP5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 DKC1O60832 514 aaKnown RBP eCLIP5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 ALDH1A2O94788 518 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 HLA-DRAP01903 254 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 CCDC192P0DO97 292 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 CKBP12277 381 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 LCP1P13796 627 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 PRKACAP17612 351 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 ITGA6P23229 1130 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 JAK1P23458 1154 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 TRIM23P36406 574 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 PPP1R2P41236 205 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 CCT5P48643 541 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 GSK3AP49840 483 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 SCNN1GP51170 649 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 TKTL1P51854 596 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 THOP1P52888 689 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 ZNF280AP59817 542 aaPredicted RBP5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 SSTP61278 116 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 TFAP4Q01664 338 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 ID3Q02535 119 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 LRRC32Q14392 662 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 PPP1R2P3Q6NXS1 205 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 ZNF530Q6P9A1 599 aaPredicted RBP5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 B3GNT9Q6UX72 402 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 SMIM5Q71RC9 77 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 LILRB4Q8NHJ6 448 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 SLC35G2Q8TBE7 412 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 DENND1AQ8TEH3 1009 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 OSCP1Q8WVF1 389 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 DIO2Q92813 273 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 ZNF653Q96CK0 615 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 DCAF5Q96JK2 942 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 PHACTR3Q96KR7 559 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 FANCD2OSQ96PS1 177 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 ASB2Q96Q27 587 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 TMEM237Q96Q45 408 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 TAAR9Q96RI9 348 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 YME1L1Q96TA2 773 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 TSC22D3Q99576 134 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 C19orf43Q9BQ61 176 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 TPK1Q9H3S4 243 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 C12orf10Q9HB07 376 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 INIPQ9NRY2 104 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 SLC39A1Q9NY26 324 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 KCNK4Q9NYG8 393 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 MIS18AQ9NYP9 233 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 BAG5Q9UL15 447 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 MED16Q9Y2X0 877 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 PCDHB4Q9Y5E5 795 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 ADAMTS7Q9UKP4 1686 aa5.06□□□□□ -1.6
CCDC88A-209ENST00000456975 A0A0G2JLW4 131 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 CTAGE9A4FU28 777 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 ERVV-2B6SEH9 535 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 EBAG9O00559 213 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 APOL1O14791 398 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 NIPSNAP2O75323 286 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 LRRN2O75325 713 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 ECDO95905 644 aaPredicted RBP5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 CKMP06732 381 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 MMP10P09238 476 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 POLR2MP0CAP2 368 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 CYP2A6P11509 494 aaPredicted RBP5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 HMGB2P26583 209 aaKnown RBP5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 STAT1P42224 750 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 LSSP48449 732 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 GNAQP50148 359 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 BPIFB4P59827 614 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 CSNK2BP67870 215 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 CYP4F8P98187 520 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 OTUD4Q01804 1114 aaKnown RBP5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 SCARB2Q14108 478 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 KRT32Q14532 448 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 C5orf22Q49AR2 442 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 CEP55Q53EZ4 464 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 TMEM177Q53S58 311 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 HSP90AA4PQ58FG1 418 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 STXBP5Q5T5C0 1151 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 ITPRIPL1Q6GPH6 555 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 SIGIRRQ6IA17 410 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 RAB12Q6IQ22 244 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 C11orf88Q6PI97 169 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 BEND4Q6ZU67 534 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 GALNTL5Q7Z4T8 443 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 SRGAP1Q7Z6B7 1085 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 GALNT7Q86SF2 657 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 AMIGO3Q86WK7 504 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 REXO1L1PQ8IX06 675 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 CISD2Q8N5K1 135 aaKnown RBP5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 CAMKK1Q8N5S9 505 aa5.05□□□□□ -1.6
CCDC88A-209ENST00000456975 KREMEN2Q8NCW0 462 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms