RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 CMTM3Q96MX0 182 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 FAM118BQ9BPY3 351 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 NELFAQ9H3P2 528 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 DBR1Q9UK59 544 aaKnown RBP2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 CPSF3Q9UKF6 684 aaKnown RBP2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 CA14Q9ULX7 337 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 TBC1D30Q9Y2I9 924 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 GDAQ9Y2T3 454 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 MED16Q9Y2X0 877 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 ACTL7AQ9Y615 435 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 KCNE2Q9Y6J6 123 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 X6R8D5 127 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 MEGF11A6BM72 1044 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 KIAA0391O15091 583 aaKnown RBP2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 HNRNPRO43390 633 aaKnown RBP2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 SASH1O94885 1247 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 PDE8BO95263 885 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 WISP1O95388 367 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 ABCB1P08183 1280 aaPredicted RBP2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 GLB1P16278 677 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 IFNAR1P17181 557 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 TGM1P22735 817 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 PTGS1P23219 599 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 CPT1AP50416 773 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 TKTL1P51854 596 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 CDH15P55291 814 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 CYP27A1Q02318 531 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 LRRC74AQ0VAA2 488 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 MTA1Q13330 715 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 TNFAIP1Q13829 316 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 HABP4Q5JVS0 413 aaKnown RBP2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 KLHL35Q6PF15 583 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 FAM111BQ6SJ93 734 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 KRT28Q7Z3Y7 464 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 ADGRG6Q86SQ4 1221 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 MICU3Q86XE3 530 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 DCP2Q8IU60 420 aaKnown RBP2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 SCN4BQ8IWT1 228 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 PSMA8Q8TAA3 256 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 SH3RF3Q8TEJ3 882 aaPredicted RBP2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 PRAM1Q96QH2 718 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 ABCG8Q9H221 673 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 VPS16Q9H269 839 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 MROH8Q9H579 483 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 MCM9Q9NXL9 1143 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 AJAP1Q9UKB5 411 aaPredicted RBP2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 H3BS24 57 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 M0QYG6 137 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 PLOD2O00469 737 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 STX6O43752 255 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 KIF5CO60282 957 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 TSC22D2O75157 780 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 KIAA0754O94854 1291 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 CCDC159P0C7I6 412 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 FAM87AP0C7U9 286 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 RAP2AP10114 183 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 IL1R1P14778 569 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 FGFR4P22455 802 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 APEX1P27695 318 aaKnown RBP2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 RCAN1P53805 252 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 PNLIPRP1P54315 467 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 PRAMEP78395 509 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 ARHGEF7Q14155 803 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 CSHL1Q14406 222 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 KCNAB1Q14722 419 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 INSCQ1MX18 579 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 SLC5A9Q2M3M2 681 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 TOR1AIP1Q5JTV8 583 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 C9orf152Q5JTZ5 239 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 GARNL3Q5VVW2 1013 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 ADCK1Q86TW2 530 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 RHPN2Q8IUC4 686 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 FAM71DQ8N9W8 422 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 Q8NFD4 153 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 FOXRED1Q96CU9 486 aaPredicted RBP2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 PGAP3Q96FM1 320 aaPredicted RBP2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 GCNAQ96QF7 691 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 PI4K2AQ9BTU6 479 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 FUT8Q9BYC5 575 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 USP44Q9H0E7 712 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 DPH5Q9H2P9 285 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 SEMA6CQ9H3T2 930 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 ACSS3Q9H6R3 686 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 VPS37BQ9H9H4 285 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 FANCFQ9NPI8 374 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 G6PC2Q9NQR9 355 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 KCMF1Q9P0J7 381 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 ASH2LQ9UBL3 628 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 DNAI1Q9UI46 699 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 MAGEL2Q9UJ55 1249 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 ZDHHC8Q9ULC8 765 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 TRPV2Q9Y5S1 764 aa2.49□□□□□ -2.01
CCDC88A-208ENST00000444458 RNF103-CHMP3A0A140T963 221 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 FAM237BA0A1B0GVD1 139 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 AGAP14A8MT82 685 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 EIF3CLB5ME19 914 aaKnown RBP2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 KIF28PB7ZC32 967 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 RNF103O00237 685 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 CTDSP2O14595 271 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 PGRMC2O15173 223 aa2.48□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms