RNA–Protein interactions for RNA: ENST00000442054.5

CDC42BPA-208, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 1 (best)

Gene CDC42BPA, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-208ENST00000442054 SGSM1Q2NKQ1 1148 aa7.76□□□□□ -1.17
CDC42BPA-208ENST00000442054 KRT39Q6A163 491 aa7.76□□□□□ -1.17
CDC42BPA-208ENST00000442054 NT5DC4Q86YG4 428 aa7.76□□□□□ -1.17
CDC42BPA-208ENST00000442054 BRSK2Q8IWQ3 736 aa7.76□□□□□ -1.17
CDC42BPA-208ENST00000442054 PBXIP1Q96AQ6 731 aa7.76□□□□□ -1.17
CDC42BPA-208ENST00000442054 CCT8L2Q96SF2 557 aa7.76□□□□□ -1.17
CDC42BPA-208ENST00000442054 SYT15Q9BQS2 421 aa7.76□□□□□ -1.17
CDC42BPA-208ENST00000442054 CCDC134Q9H6E4 229 aa7.76□□□□□ -1.17
CDC42BPA-208ENST00000442054 NDRG2Q9UN36 371 aaKnown RBP7.76□□□□□ -1.17
CDC42BPA-208ENST00000442054 MRPS17Q9Y2R5 130 aaKnown RBP7.76□□□□□ -1.17
CDC42BPA-208ENST00000442054 SYN3O14994 580 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 OAS1P00973 400 aaKnown RBP7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 TMEM253P0C7T8 217 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 CCDC172P0C7W6 258 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 CHRNB2P17787 502 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 KCNQ1P51787 676 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 GALCP54803 685 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 ICE2Q659A1 982 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 KCTD16Q68DU8 428 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 VPS36Q86VN1 386 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 SMG8Q8ND04 991 aaKnown RBP7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 OR2W6PQ8NHA6 318 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 GANCQ8TET4 914 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 CENPTQ96BT3 561 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 TMEM109Q9BVC6 243 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 NFKBIZQ9BYH8 718 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 STK33Q9BYT3 514 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 ZFP14Q9HCL3 533 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 MIOSQ9NXC5 875 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 BUB1BO60566 1050 aaPredicted RBP7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 IRF1P10914 325 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 HNRNPH1P31943 449 aaKnown RBP7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 SEC24CP53992 1094 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 RNASE9P60153 205 aaKnown RBP7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 GTF2BQ00403 316 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 TWF1Q12792 350 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 EXOC3L4Q17RC7 722 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 NLRP14Q86W24 1093 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 SLC22A17Q8WUG5 538 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 RNF25Q96BH1 459 aaPredicted RBP7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 NECAB3Q96P71 396 aaPredicted RBP7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 KLHL5Q96PQ7 755 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 SMPD4Q9NXE4 827 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 ITGA11Q9UKX5 1188 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 NEU2Q9Y3R4 380 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 USP15Q9Y4E8 981 aaPredicted RBP7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 CCDC188H7C350 402 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 HSF2BPO75031 334 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 MBL2P11226 248 aaPredicted RBP7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 RALAP11233 206 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 DRD4P21917 467 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 SOX5P35711 763 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 HTRA4P83105 476 aaPredicted RBP7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 PLCB3Q01970 1234 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 SLC10A6Q3KNW5 377 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 TTC27Q6P3X3 843 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 C12orf56Q8IXR9 622 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 TTC8Q8TAM2 541 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 TATDN2Q93075 761 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 FBXO32Q969P5 355 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 NOCTQ9UK39 431 aaKnown RBP7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 DAAM1Q9Y4D1 1078 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 F5P12259 2224 aa7.75□□□□□ -1.17
CDC42BPA-208ENST00000442054 WEE1P30291 646 aa7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 PAFAH1B1P43034 410 aa7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 FMO5P49326 533 aa7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 SNRPFP62306 86 aaKnown RBP7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 MCL1Q07820 350 aa7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 ACTN3Q08043 901 aaPredicted RBP7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 FAM187BQ17R55 369 aa7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 SLC35G2Q8TBE7 412 aa7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 LINC01599Q8WXQ3 324 aa7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 GUCD1Q96NT3 240 aa7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 DDX47Q9H0S4 455 aaKnown RBP7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 YY1AP1Q9H869 796 aa7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 UXTQ9UBK9 157 aaPredicted RBP7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 LZTS1Q9Y250 596 aa7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 C2CD2Q9Y426 696 aa7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 ANK1P16157 1881 aa7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 A0A0B4J269 797 aa7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 PGRMC1O00264 195 aaKnown RBP7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 KCNK3O14649 394 aa7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 TTI1O43156 1089 aa7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 HMBSP08397 361 aa7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 PAX3P23760 479 aa7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 MMP13P45452 471 aa7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 AFF1P51825 1210 aaKnown RBP7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 NCKAP1LP55160 1127 aa7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 FAM189BP81408 668 aa7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 DSC3Q14574 896 aa7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 RPS6KA1Q15418 735 aa7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 MDH1BQ5I0G3 518 aa7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 GPR158Q5T848 1215 aa7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 MMS22LQ6ZRQ5 1243 aa7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 TTC39CQ8N584 583 aa7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 FBXL13Q8NEE6 735 aa7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 BHMTQ93088 406 aa7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 SHDQ96IW2 340 aa7.74□□□□□ -1.17
CDC42BPA-208ENST00000442054 SNX27Q96L92 541 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms