RNA–Protein interactions for RNA: ENST00000434233.2

LINC00339-204, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best)

Gene LINC00339, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-204ENST00000434233 PATJQ8NI35 1801 aa12.96□□□□□ -0.33
LINC00339-204ENST00000434233 RANBP2P49792 3224 aaKnown RBP12.96□□□□□ -0.33
LINC00339-204ENST00000434233 ZNF638Q14966 1978 aaKnown RBP12.96□□□□□ -0.34
LINC00339-204ENST00000434233 PRRC2BQ5JSZ5 2229 aaKnown RBP12.95□□□□□ -0.34
LINC00339-204ENST00000434233 PAPSS1O43252 624 aaPredicted RBP12.95□□□□□ -0.34
LINC00339-204ENST00000434233 SART1O43290 800 aaKnown RBP12.95□□□□□ -0.34
LINC00339-204ENST00000434233 XYLBO75191 536 aa12.95□□□□□ -0.34
LINC00339-204ENST00000434233 RFPL2O75678 378 aa12.95□□□□□ -0.34
LINC00339-204ENST00000434233 GLP2RO95838 553 aa12.95□□□□□ -0.34
LINC00339-204ENST00000434233 ERBB2P04626 1255 aa12.95□□□□□ -0.34
LINC00339-204ENST00000434233 SCNN1AP37088 669 aa12.95□□□□□ -0.34
LINC00339-204ENST00000434233 PPP3CCP48454 512 aa12.95□□□□□ -0.34
LINC00339-204ENST00000434233 GALCP54803 685 aa12.95□□□□□ -0.34
LINC00339-204ENST00000434233 DAOAP59103 153 aa12.95□□□□□ -0.34
LINC00339-204ENST00000434233 USP46P62068 366 aa12.95□□□□□ -0.34
LINC00339-204ENST00000434233 GPC5P78333 572 aa12.95□□□□□ -0.34
LINC00339-204ENST00000434233 MRPS5P82675 430 aaKnown RBP12.95□□□□□ -0.34
LINC00339-204ENST00000434233 RBM10P98175 930 aaKnown RBP12.95□□□□□ -0.34
LINC00339-204ENST00000434233 SLC6A3Q01959 620 aa12.95□□□□□ -0.34
LINC00339-204ENST00000434233 ADIGQ0VDE8 80 aa12.95□□□□□ -0.34
LINC00339-204ENST00000434233 MTMR3Q13615 1198 aa12.95□□□□□ -0.34
LINC00339-204ENST00000434233 EFHC1Q5JVL4 640 aa12.95□□□□□ -0.34
LINC00339-204ENST00000434233 MMS22LQ6ZRQ5 1243 aa12.95□□□□□ -0.34
LINC00339-204ENST00000434233 MON1AQ86VX9 555 aa12.95□□□□□ -0.34
LINC00339-204ENST00000434233 XYLT1Q86Y38 959 aa12.95□□□□□ -0.34
LINC00339-204ENST00000434233 SIX6OS1Q8N1H7 587 aa12.95□□□□□ -0.34
LINC00339-204ENST00000434233 MYLIPQ8WY64 445 aa12.95□□□□□ -0.34
LINC00339-204ENST00000434233 OVCA2Q8WZ82 227 aa12.95□□□□□ -0.34
LINC00339-204ENST00000434233 MCRS1Q96EZ8 462 aa12.95□□□□□ -0.34
LINC00339-204ENST00000434233 GUCD1Q96NT3 240 aa12.95□□□□□ -0.34
LINC00339-204ENST00000434233 C11orf70Q9BRQ4 267 aa12.95□□□□□ -0.34
LINC00339-204ENST00000434233 LRRC3Q9BY71 257 aa12.95□□□□□ -0.34
LINC00339-204ENST00000434233 ULBP1Q9BZM6 244 aa12.95□□□□□ -0.34
LINC00339-204ENST00000434233 SFXN1Q9H9B4 322 aa12.95□□□□□ -0.34
LINC00339-204ENST00000434233 TJP2Q9UDY2 1190 aa12.95□□□□□ -0.34
LINC00339-204ENST00000434233 MAGED2Q9UNF1 606 aaPredicted RBP12.95□□□□□ -0.34
LINC00339-204ENST00000434233 NCANO14594 1321 aa12.94□□□□□ -0.34
LINC00339-204ENST00000434233 SPDYE4A6NLX3 237 aa12.94□□□□□ -0.34
LINC00339-204ENST00000434233 PIK3R2O00459 728 aa12.94□□□□□ -0.34
LINC00339-204ENST00000434233 CCL16O15467 120 aa12.94□□□□□ -0.34
LINC00339-204ENST00000434233 LINC01565O15544 149 aa12.94□□□□□ -0.34
LINC00339-204ENST00000434233 FGF19O95750 216 aa12.94□□□□□ -0.34
LINC00339-204ENST00000434233 GLI1P08151 1106 aa12.94□□□□□ -0.34
LINC00339-204ENST00000434233 USP17L7P0C7H9 530 aa12.94□□□□□ -0.34
LINC00339-204ENST00000434233 TMEM253P0C7T8 217 aa12.94□□□□□ -0.34
LINC00339-204ENST00000434233 TAF10Q12962 218 aa12.94□□□□□ -0.34
LINC00339-204ENST00000434233 PABPC1LQ4VXU2 614 aaKnown RBP12.94□□□□□ -0.34
LINC00339-204ENST00000434233 HS1BP3Q53T59 392 aa12.94□□□□□ -0.34
LINC00339-204ENST00000434233 CYP4A22Q5TCH4 519 aa12.94□□□□□ -0.34
LINC00339-204ENST00000434233 SNX30Q5VWJ9 437 aa12.94□□□□□ -0.34
LINC00339-204ENST00000434233 PLEKHA7Q6IQ23 1121 aa12.94□□□□□ -0.34
LINC00339-204ENST00000434233 FAM183BPQ6ZVS7 135 aa12.94□□□□□ -0.34
LINC00339-204ENST00000434233 DNAAF5Q86Y56 855 aa12.94□□□□□ -0.34
LINC00339-204ENST00000434233 ARHGAP18Q8N392 663 aa12.94□□□□□ -0.34
LINC00339-204ENST00000434233 TXLNBQ8N3L3 684 aa12.94□□□□□ -0.34
LINC00339-204ENST00000434233 ZNF276Q8N554 614 aa12.94□□□□□ -0.34
LINC00339-204ENST00000434233 LEMD2Q8NC56 503 aa12.94□□□□□ -0.34
LINC00339-204ENST00000434233 FBXO32Q969P5 355 aa12.94□□□□□ -0.34
LINC00339-204ENST00000434233 ZNF707Q96C28 371 aaPredicted RBP12.94□□□□□ -0.34
LINC00339-204ENST00000434233 PABPC5Q96DU9 382 aaKnown RBP12.94□□□□□ -0.34
LINC00339-204ENST00000434233 SLITRK1Q96PX8 696 aa12.94□□□□□ -0.34
LINC00339-204ENST00000434233 AVENQ9NQS1 362 aaPredicted RBP12.94□□□□□ -0.34
LINC00339-204ENST00000434233 ASNSD1Q9NWL6 643 aa12.94□□□□□ -0.34
LINC00339-204ENST00000434233 DNMT3BQ9UBC3 853 aaKnown RBP12.94□□□□□ -0.34
LINC00339-204ENST00000434233 CNOT8Q9UFF9 292 aaKnown RBP12.94□□□□□ -0.34
LINC00339-204ENST00000434233 CHORDC1Q9UHD1 332 aaPredicted RBP12.94□□□□□ -0.34
LINC00339-204ENST00000434233 ADGRG1Q9Y653 693 aa12.94□□□□□ -0.34
LINC00339-204ENST00000434233 CHD9Q3L8U1 2897 aa12.94□□□□□ -0.34
LINC00339-204ENST00000434233 TCRBV5S1A1TA0A578 114 aa12.93□□□□□ -0.34
LINC00339-204ENST00000434233 SIGLEC16A6NMB1 481 aa12.93□□□□□ -0.34
LINC00339-204ENST00000434233 F11P03951 625 aa12.93□□□□□ -0.34
LINC00339-204ENST00000434233 CYP1A2P05177 515 aa12.93□□□□□ -0.34
LINC00339-204ENST00000434233 ZDHHC11BP0C7U3 371 aa12.93□□□□□ -0.34
LINC00339-204ENST00000434233 RRM1P23921 792 aa12.93□□□□□ -0.34
LINC00339-204ENST00000434233 PSEN1P49768 467 aa12.93□□□□□ -0.34
LINC00339-204ENST00000434233 EPHA5P54756 1037 aa12.93□□□□□ -0.34
LINC00339-204ENST00000434233 ITIH3Q06033 890 aa12.93□□□□□ -0.34
LINC00339-204ENST00000434233 IFRD2Q12894 506 aaPredicted RBP12.93□□□□□ -0.34
LINC00339-204ENST00000434233 C2CD6Q53TS8 623 aa12.93□□□□□ -0.34
LINC00339-204ENST00000434233 SYCE2Q6PIF2 218 aa12.93□□□□□ -0.34
LINC00339-204ENST00000434233 OLFML1Q6UWY5 402 aa12.93□□□□□ -0.34
LINC00339-204ENST00000434233 TOGARAM2Q6ZUX3 1019 aa12.93□□□□□ -0.34
LINC00339-204ENST00000434233 BEND5Q7L4P6 421 aa12.93□□□□□ -0.34
LINC00339-204ENST00000434233 ARCQ7LC44 396 aa12.93□□□□□ -0.34
LINC00339-204ENST00000434233 GPR149Q86SP6 731 aa12.93□□□□□ -0.34
LINC00339-204ENST00000434233 C12orf76Q8N812 135 aaPredicted RBP12.93□□□□□ -0.34
LINC00339-204ENST00000434233 C3orf20Q8ND61 904 aa12.93□□□□□ -0.34
LINC00339-204ENST00000434233 STKLD1Q8NE28 680 aa12.93□□□□□ -0.34
LINC00339-204ENST00000434233 ACRBPQ8NEB7 543 aa12.93□□□□□ -0.34
LINC00339-204ENST00000434233 PDZD8Q8NEN9 1154 aa12.93□□□□□ -0.34
LINC00339-204ENST00000434233 CLEC4CQ8WTT0 213 aa12.93□□□□□ -0.34
LINC00339-204ENST00000434233 CTNNBL1Q8WYA6 563 aaPredicted RBP12.93□□□□□ -0.34
LINC00339-204ENST00000434233 KHSRPQ92945 711 aaKnown RBP eCLIP12.93□□□□□ -0.34
LINC00339-204ENST00000434233 ZNF653Q96CK0 615 aa12.93□□□□□ -0.34
LINC00339-204ENST00000434233 PACSIN1Q9BY11 444 aa12.93□□□□□ -0.34
LINC00339-204ENST00000434233 THAP2Q9H0W7 228 aa12.93□□□□□ -0.34
LINC00339-204ENST00000434233 S1PR5Q9H228 398 aa12.93□□□□□ -0.34
LINC00339-204ENST00000434233 PIDD1Q9HB75 910 aa12.93□□□□□ -0.34
LINC00339-204ENST00000434233 MRPL47Q9HD33 250 aaKnown RBP12.93□□□□□ -0.34
LINC00339-204ENST00000434233 TLR8Q9NR97 1041 aaKnown RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms