RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 NKX1-2Q9UD57 310 aaPredicted RBP6.84□□□□□ -1.31
USP54-206ENST00000433394 SCAF8Q9UPN6 1271 aaKnown RBP6.84□□□□□ -1.31
USP54-206ENST00000433394 MAP3K2Q9Y2U5 619 aa6.84□□□□□ -1.31
USP54-206ENST00000433394 OR2W5A6NFC9 320 aa6.83□□□□□ -1.32
USP54-206ENST00000433394 AHRRA9YTQ3 701 aa6.83□□□□□ -1.32
USP54-206ENST00000433394 EPB41L2O43491 1005 aaKnown RBP6.83□□□□□ -1.32
USP54-206ENST00000433394 AGR2O95994 175 aa6.83□□□□□ -1.32
USP54-206ENST00000433394 ELANEP08246 267 aa6.83□□□□□ -1.32
USP54-206ENST00000433394 ADORA2AP29274 412 aa6.83□□□□□ -1.32
USP54-206ENST00000433394 ADD2P35612 726 aa6.83□□□□□ -1.32
USP54-206ENST00000433394 BMPR1AP36894 532 aa6.83□□□□□ -1.32
USP54-206ENST00000433394 ZEB1P37275 1124 aaPredicted RBP6.83□□□□□ -1.32
USP54-206ENST00000433394 GSTM5P46439 218 aa6.83□□□□□ -1.32
USP54-206ENST00000433394 NXPH1P58417 271 aa6.83□□□□□ -1.32
USP54-206ENST00000433394 GUCY1B3Q02153 619 aa6.83□□□□□ -1.32
USP54-206ENST00000433394 EFR3AQ14156 821 aa6.83□□□□□ -1.32
USP54-206ENST00000433394 ICAM4Q14773 271 aa6.83□□□□□ -1.32
USP54-206ENST00000433394 ST3GAL2Q16842 350 aa6.83□□□□□ -1.32
USP54-206ENST00000433394 ZNF569Q5MCW4 686 aa6.83□□□□□ -1.32
USP54-206ENST00000433394 VPS53Q5VIR6 699 aa6.83□□□□□ -1.32
USP54-206ENST00000433394 WDR78Q5VTH9 848 aa6.83□□□□□ -1.32
USP54-206ENST00000433394 ZNF585AQ6P3V2 769 aa6.83□□□□□ -1.32
USP54-206ENST00000433394 LRRC55Q6ZSA7 311 aa6.83□□□□□ -1.32
USP54-206ENST00000433394 MOGAT3Q86VF5 341 aa6.83□□□□□ -1.32
USP54-206ENST00000433394 ZNF276Q8N554 614 aa6.83□□□□□ -1.32
USP54-206ENST00000433394 SDCCAG3Q96C92 435 aa6.83□□□□□ -1.32
USP54-206ENST00000433394 PTCD3Q96EY7 689 aaKnown RBP6.83□□□□□ -1.32
USP54-206ENST00000433394 MPP4Q96JB8 637 aa6.83□□□□□ -1.32
USP54-206ENST00000433394 C17orf80Q9BSJ5 609 aa6.83□□□□□ -1.32
USP54-206ENST00000433394 BDH2Q9BUT1 245 aa6.83□□□□□ -1.32
USP54-206ENST00000433394 DPCDQ9BVM2 203 aaPredicted RBP6.83□□□□□ -1.32
USP54-206ENST00000433394 VN1R3Q9BXE9 311 aa6.83□□□□□ -1.32
USP54-206ENST00000433394 PABPC3Q9H361 631 aaKnown RBP6.83□□□□□ -1.32
USP54-206ENST00000433394 SERHL2Q9H4I8 314 aa6.83□□□□□ -1.32
USP54-206ENST00000433394 TRIM36Q9NQ86 728 aa6.83□□□□□ -1.32
USP54-206ENST00000433394 PRDM8Q9NQV8 689 aa6.83□□□□□ -1.32
USP54-206ENST00000433394 NDUFAF4Q9P032 175 aa6.83□□□□□ -1.32
USP54-206ENST00000433394 TESQ9UGI8 421 aaKnown RBP6.83□□□□□ -1.32
USP54-206ENST00000433394 SLC13A4Q9UKG4 626 aa6.83□□□□□ -1.32
USP54-206ENST00000433394 CNOT11Q9UKZ1 510 aaKnown RBP6.83□□□□□ -1.32
USP54-206ENST00000433394 C19orf53Q9UNZ5 99 aaPredicted RBP6.83□□□□□ -1.32
USP54-206ENST00000433394 K7ESM1 405 aa6.82□□□□□ -1.32
USP54-206ENST00000433394 SLC16A3O15427 465 aaKnown RBP6.82□□□□□ -1.32
USP54-206ENST00000433394 FAM20BO75063 409 aa6.82□□□□□ -1.32
USP54-206ENST00000433394 ARP10275 920 aa6.82□□□□□ -1.32
USP54-206ENST00000433394 MCM2P49736 904 aa6.82□□□□□ -1.32
USP54-206ENST00000433394 ACTR2P61160 394 aa6.82□□□□□ -1.32
USP54-206ENST00000433394 TIGD2Q4W5G0 525 aa6.82□□□□□ -1.32
USP54-206ENST00000433394 LIN54Q6MZP7 749 aa6.82□□□□□ -1.32
USP54-206ENST00000433394 CLASRPQ8N2M8 674 aaKnown RBP6.82□□□□□ -1.32
USP54-206ENST00000433394 TTC9BQ8N6N2 239 aa6.82□□□□□ -1.32
USP54-206ENST00000433394 ATG4AQ8WYN0 398 aa6.82□□□□□ -1.32
USP54-206ENST00000433394 ZBTB45Q96K62 511 aaPredicted RBP6.82□□□□□ -1.32
USP54-206ENST00000433394 SSBP3Q9BWW4 388 aaPredicted RBP6.82□□□□□ -1.32
USP54-206ENST00000433394 TEX101Q9BY14 249 aa6.82□□□□□ -1.32
USP54-206ENST00000433394 AMBRA1Q9C0C7 1298 aa6.82□□□□□ -1.32
USP54-206ENST00000433394 UNC45AQ9H3U1 944 aa6.82□□□□□ -1.32
USP54-206ENST00000433394 VSX1Q9NZR4 365 aaPredicted RBP6.82□□□□□ -1.32
USP54-206ENST00000433394 PDP2Q9P2J9 529 aa6.82□□□□□ -1.32
USP54-206ENST00000433394 SRP68Q9UHB9 627 aaKnown RBP6.82□□□□□ -1.32
USP54-206ENST00000433394 CCNL1Q9UK58 526 aaPredicted RBP6.82□□□□□ -1.32
USP54-206ENST00000433394 ZBTB32Q9Y2Y4 487 aaPredicted RBP6.82□□□□□ -1.32
USP54-206ENST00000433394 NISCHQ9Y2I1 1504 aa6.81□□□□□ -1.32
USP54-206ENST00000433394 CCDC78A2IDD5 438 aa6.81□□□□□ -1.32
USP54-206ENST00000433394 PCDH17O14917 1159 aa6.81□□□□□ -1.32
USP54-206ENST00000433394 CSF1RP07333 972 aa6.81□□□□□ -1.32
USP54-206ENST00000433394 GYS1P13807 737 aa6.81□□□□□ -1.32
USP54-206ENST00000433394 DGKQP52824 942 aa6.81□□□□□ -1.32
USP54-206ENST00000433394 ADAM17P78536 824 aa6.81□□□□□ -1.32
USP54-206ENST00000433394 TIAL1Q01085 375 aaKnown RBP eCLIP6.81□□□□□ -1.32
USP54-206ENST00000433394 PLP2Q04941 152 aa6.81□□□□□ -1.32
USP54-206ENST00000433394 LMOD3Q0VAK6 560 aa6.81□□□□□ -1.32
USP54-206ENST00000433394 DDX10Q13206 875 aaKnown RBP6.81□□□□□ -1.32
USP54-206ENST00000433394 TOB2Q14106 344 aaPredicted RBP6.81□□□□□ -1.32
USP54-206ENST00000433394 BEAN1Q3B7T3 259 aa6.81□□□□□ -1.32
USP54-206ENST00000433394 DENND2CQ68D51 928 aa6.81□□□□□ -1.32
USP54-206ENST00000433394 KRT27Q7Z3Y8 459 aa6.81□□□□□ -1.32
USP54-206ENST00000433394 DTX2Q86UW9 622 aa6.81□□□□□ -1.32
USP54-206ENST00000433394 FAM109AQ8N4B1 249 aa6.81□□□□□ -1.32
USP54-206ENST00000433394 TMEM57Q8N5G2 664 aa6.81□□□□□ -1.32
USP54-206ENST00000433394 TOR1AIP2Q8NFQ8 470 aa6.81□□□□□ -1.32
USP54-206ENST00000433394 SLC25A43Q8WUT9 341 aaPredicted RBP6.81□□□□□ -1.32
USP54-206ENST00000433394 PPM1MQ96MI6 270 aa6.81□□□□□ -1.32
USP54-206ENST00000433394 DDX23Q9BUQ8 820 aaKnown RBP6.81□□□□□ -1.32
USP54-206ENST00000433394 MLXIPQ9HAP2 919 aa6.81□□□□□ -1.32
USP54-206ENST00000433394 AS3MTQ9HBK9 375 aa6.81□□□□□ -1.32
USP54-206ENST00000433394 NOD2Q9HC29 1040 aa6.81□□□□□ -1.32
USP54-206ENST00000433394 RIC8AQ9NPQ8 531 aa6.81□□□□□ -1.32
USP54-206ENST00000433394 TMLHEQ9NVH6 421 aa6.81□□□□□ -1.32
USP54-206ENST00000433394 BAG5Q9UL15 447 aa6.81□□□□□ -1.32
USP54-206ENST00000433394 JAG2Q9Y219 1238 aa6.81□□□□□ -1.32
USP54-206ENST00000433394 DRG1Q9Y295 367 aaKnown RBP6.81□□□□□ -1.32
USP54-206ENST00000433394 SSX2IPQ9Y2D8 614 aa6.81□□□□□ -1.32
USP54-206ENST00000433394 SNX14Q9Y5W7 946 aa6.81□□□□□ -1.32
USP54-206ENST00000433394 CCDC196A0A1B0GTZ2 297 aa6.8□□□□□ -1.32
USP54-206ENST00000433394 GRXCR1A8MXD5 290 aa6.8□□□□□ -1.32
USP54-206ENST00000433394 EXOC5O00471 708 aa6.8□□□□□ -1.32
USP54-206ENST00000433394 PPM1DO15297 605 aa6.8□□□□□ -1.32
USP54-206ENST00000433394 NXPH3O95157 252 aa6.8□□□□□ -1.32
USP54-206ENST00000433394 LARGE1O95461 756 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms