RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 NPPBP16860 134 aa4.67□□□□□ -1.66
HMGB3-203ENST00000430118 GLDCP23378 1020 aa4.67□□□□□ -1.66
HMGB3-203ENST00000430118 SLC6A4P31645 630 aa4.67□□□□□ -1.66
HMGB3-203ENST00000430118 CPT1AP50416 773 aa4.67□□□□□ -1.66
HMGB3-203ENST00000430118 UCP3P55916 312 aa4.67□□□□□ -1.66
HMGB3-203ENST00000430118 VAMP2P63027 116 aa4.67□□□□□ -1.66
HMGB3-203ENST00000430118 DLG4P78352 724 aa4.67□□□□□ -1.66
HMGB3-203ENST00000430118 NSUN2Q08J23 767 aaKnown RBP eCLIP4.67□□□□□ -1.66
HMGB3-203ENST00000430118 FOXD4Q12950 439 aaPredicted RBP4.67□□□□□ -1.66
HMGB3-203ENST00000430118 DUSP8Q13202 625 aa4.67□□□□□ -1.66
HMGB3-203ENST00000430118 ARHGEF7Q14155 803 aa4.67□□□□□ -1.66
HMGB3-203ENST00000430118 VWA3BQ502W6 1294 aa4.67□□□□□ -1.66
HMGB3-203ENST00000430118 MCTP1Q6DN14 999 aa4.67□□□□□ -1.66
HMGB3-203ENST00000430118 TTLL5Q6EMB2 1281 aa4.67□□□□□ -1.66
HMGB3-203ENST00000430118 MFSD5Q6N075 450 aa4.67□□□□□ -1.66
HMGB3-203ENST00000430118 MRNIPQ6NTE8 343 aa4.67□□□□□ -1.66
HMGB3-203ENST00000430118 JMJD6Q6NYC1 403 aaPredicted RBP4.67□□□□□ -1.66
HMGB3-203ENST00000430118 DRICH1Q6PGQ1 229 aaPredicted RBP4.67□□□□□ -1.66
HMGB3-203ENST00000430118 MAATS1Q7Z4T9 603 aa4.67□□□□□ -1.66
HMGB3-203ENST00000430118 LRRTM4Q86VH4 590 aa4.67□□□□□ -1.66
HMGB3-203ENST00000430118 TMEFF1Q8IYR6 380 aa4.67□□□□□ -1.66
HMGB3-203ENST00000430118 MPP5Q8N3R9 675 aa4.67□□□□□ -1.66
HMGB3-203ENST00000430118 FBXO18Q8NFZ0 1043 aa4.67□□□□□ -1.66
HMGB3-203ENST00000430118 SNRNP27Q8WVK2 155 aaKnown RBP4.67□□□□□ -1.66
HMGB3-203ENST00000430118 CFHR4Q92496 578 aa4.67□□□□□ -1.66
HMGB3-203ENST00000430118 LRRC46Q96FV0 321 aa4.67□□□□□ -1.66
HMGB3-203ENST00000430118 LIN37Q96GY3 246 aaPredicted RBP4.67□□□□□ -1.66
HMGB3-203ENST00000430118 FAM167BQ9BTA0 163 aa4.67□□□□□ -1.66
HMGB3-203ENST00000430118 DDX23Q9BUQ8 820 aaKnown RBP4.67□□□□□ -1.66
HMGB3-203ENST00000430118 SORBS1Q9BX66 1292 aaKnown RBP4.67□□□□□ -1.66
HMGB3-203ENST00000430118 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.67□□□□□ -1.66
HMGB3-203ENST00000430118 ZBTB26Q9HCK0 441 aa4.67□□□□□ -1.66
HMGB3-203ENST00000430118 GJB4Q9NTQ9 266 aa4.67□□□□□ -1.66
HMGB3-203ENST00000430118 KIF17Q9P2E2 1029 aa4.67□□□□□ -1.66
HMGB3-203ENST00000430118 MID2Q9UJV3 735 aa4.67□□□□□ -1.66
HMGB3-203ENST00000430118 CRYL1Q9Y2S2 319 aa4.67□□□□□ -1.66
HMGB3-203ENST00000430118 PASKQ96RG2 1323 aa4.67□□□□□ -1.66
HMGB3-203ENST00000430118 WDR33Q9C0J8 1336 aaKnown RBP4.67□□□□□ -1.66
HMGB3-203ENST00000430118 VIRMAQ69YN4 1812 aaKnown RBP4.67□□□□□ -1.66
HMGB3-203ENST00000430118 A0A1W2PP64 1363 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 KDRP35968 1356 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 A0A087WZ62 844 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 TCRBV7S2A1N4TA0A589 114 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 OR2W5A6NFC9 320 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 AQP12BA6NM10 295 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 H0YIN7 160 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 TRIM38O00635 465 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 HOXA3O43365 443 aaPredicted RBP4.66□□□□□ -1.66
HMGB3-203ENST00000430118 RRP9O43818 475 aaKnown RBP4.66□□□□□ -1.66
HMGB3-203ENST00000430118 RPS6KA4O75676 772 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 SOAT2O75908 522 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 RHOBTB3O94955 611 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 HSP90AB1P08238 724 aaKnown RBP4.66□□□□□ -1.66
HMGB3-203ENST00000430118 KCNA3P22001 575 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 FDXRP22570 491 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 MGAT1P26572 445 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 ZNF135P52742 658 aaPredicted RBP4.66□□□□□ -1.66
HMGB3-203ENST00000430118 RRADP55042 308 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 UBXN2BQ14CS0 331 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 FAAH2Q6GMR7 532 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 LIN54Q6MZP7 749 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 FITM2Q8N6M3 262 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 TXNDC5Q8NBS9 432 aaKnown RBP4.66□□□□□ -1.66
HMGB3-203ENST00000430118 OR14K1Q8NGZ2 314 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 IPO4Q8TEX9 1081 aaKnown RBP4.66□□□□□ -1.66
HMGB3-203ENST00000430118 HERVK_113Q902F9 699 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 PIGBQ92521 554 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 MBD6Q96DN6 1003 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 LCORQ96JN0 433 aaPredicted RBP4.66□□□□□ -1.66
HMGB3-203ENST00000430118 ZNF668Q96K58 619 aaPredicted RBP4.66□□□□□ -1.66
HMGB3-203ENST00000430118 RPL10LQ96L21 214 aaKnown RBP4.66□□□□□ -1.66
HMGB3-203ENST00000430118 DIRC2Q96SL1 478 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 NELL2Q99435 816 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 MYOCQ99972 504 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 TCF25Q9BQ70 676 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 MESP1Q9BRJ9 268 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 MS4A7Q9GZW8 240 aaPredicted RBP4.66□□□□□ -1.66
HMGB3-203ENST00000430118 TAOK3Q9H2K8 898 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 TP63Q9H3D4 680 aaPredicted RBP4.66□□□□□ -1.66
HMGB3-203ENST00000430118 NELFAQ9H3P2 528 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 HELLSQ9NRZ9 838 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 BCCIPQ9P287 314 aaKnown RBP eCLIP4.66□□□□□ -1.66
HMGB3-203ENST00000430118 IGSF9Q9P2J2 1179 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 DKK4Q9UBT3 224 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 HDAC9Q9UKV0 1011 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 NR2E1Q9Y466 385 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 DTNAQ9Y4J8 743 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 ITGB4P16144 1822 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 SBF1O95248 1867 aa4.66□□□□□ -1.66
HMGB3-203ENST00000430118 USP42Q9H9J4 1324 aaKnown RBP4.66□□□□□ -1.66
HMGB3-203ENST00000430118 DLEC1Q9Y238 1755 aa4.65□□□□□ -1.66
HMGB3-203ENST00000430118 MAP2P11137 1827 aaKnown RBP4.65□□□□□ -1.66
HMGB3-203ENST00000430118 SCN4AP35499 1836 aa4.65□□□□□ -1.66
HMGB3-203ENST00000430118 M0QYG6 137 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 EYA2O00167 538 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 HOXC11O43248 304 aaPredicted RBP4.65□□□□□ -1.67
HMGB3-203ENST00000430118 PYGLP06737 847 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 ATXN1LP0C7T5 689 aaKnown RBP4.65□□□□□ -1.67
HMGB3-203ENST00000430118 MED14OSP0DP75 135 aa4.65□□□□□ -1.67
HMGB3-203ENST00000430118 XBP1P17861 261 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 127.5 ms