RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 TPTEP56180 551 aa4.91□□□□□ -1.62
USP40-204ENST00000427947 SIM1P81133 766 aaPredicted RBP4.91□□□□□ -1.62
USP40-204ENST00000427947 ZNF169Q14929 603 aaPredicted RBP4.91□□□□□ -1.62
USP40-204ENST00000427947 FAXCQ5TGI0 409 aa4.91□□□□□ -1.62
USP40-204ENST00000427947 USP17L6PQ6QN14 398 aa4.91□□□□□ -1.62
USP40-204ENST00000427947 DPY19L3Q6ZPD9 716 aa4.91□□□□□ -1.62
USP40-204ENST00000427947 ZNF551Q7Z340 670 aaPredicted RBP4.91□□□□□ -1.62
USP40-204ENST00000427947 MYLK4Q86YV6 388 aaPredicted RBP4.91□□□□□ -1.62
USP40-204ENST00000427947 CCDC28AQ8IWP9 274 aa4.91□□□□□ -1.62
USP40-204ENST00000427947 HIST1H2AAQ96QV6 131 aa4.91□□□□□ -1.62
USP40-204ENST00000427947 CRB3Q9BUF7 120 aa4.91□□□□□ -1.62
USP40-204ENST00000427947 STK33Q9BYT3 514 aa4.91□□□□□ -1.62
USP40-204ENST00000427947 INO80BQ9C086 356 aaPredicted RBP4.91□□□□□ -1.62
USP40-204ENST00000427947 WDR12Q9GZL7 423 aaKnown RBP4.91□□□□□ -1.62
USP40-204ENST00000427947 PCDHAC1Q9H158 963 aa4.91□□□□□ -1.62
USP40-204ENST00000427947 VPS51Q9UID3 782 aa4.91□□□□□ -1.62
USP40-204ENST00000427947 SLC39A10Q9ULF5 831 aa4.91□□□□□ -1.62
USP40-204ENST00000427947 ZMYND8Q9ULU4 1186 aaPredicted RBP4.91□□□□□ -1.62
USP40-204ENST00000427947 ST3GAL5Q9UNP4 418 aa4.91□□□□□ -1.62
USP40-204ENST00000427947 SH2B3Q9UQQ2 575 aa4.91□□□□□ -1.62
USP40-204ENST00000427947 PSMD9O00233 223 aa4.9□□□□□ -1.63
USP40-204ENST00000427947 MGST3O14880 152 aa4.9□□□□□ -1.63
USP40-204ENST00000427947 HNRNPDLO14979 420 aaKnown RBP4.9□□□□□ -1.63
USP40-204ENST00000427947 ADAMTS3O15072 1205 aa4.9□□□□□ -1.63
USP40-204ENST00000427947 KCNQ3O43525 872 aa4.9□□□□□ -1.63
USP40-204ENST00000427947 PLA2G6O60733 806 aa4.9□□□□□ -1.63
USP40-204ENST00000427947 RHOBTB3O94955 611 aa4.9□□□□□ -1.63
USP40-204ENST00000427947 SLPIP03973 132 aa4.9□□□□□ -1.63
USP40-204ENST00000427947 NDUFB7P17568 137 aa4.9□□□□□ -1.63
USP40-204ENST00000427947 EGR1P18146 543 aa4.9□□□□□ -1.63
USP40-204ENST00000427947 PROZP22891 400 aa4.9□□□□□ -1.63
USP40-204ENST00000427947 MST1P26927 711 aa4.9□□□□□ -1.63
USP40-204ENST00000427947 TIRAPP58753 221 aa4.9□□□□□ -1.63
USP40-204ENST00000427947 TIAL1Q01085 375 aaKnown RBP eCLIP4.9□□□□□ -1.63
USP40-204ENST00000427947 TNFAIP2Q03169 654 aa4.9□□□□□ -1.63
USP40-204ENST00000427947 DPTQ07507 201 aa4.9□□□□□ -1.63
USP40-204ENST00000427947 GPS1Q13098 491 aa4.9□□□□□ -1.63
USP40-204ENST00000427947 CHAF1AQ13111 956 aaPredicted RBP4.9□□□□□ -1.63
USP40-204ENST00000427947 RAP1GAP2Q684P5 730 aa4.9□□□□□ -1.63
USP40-204ENST00000427947 MRNIPQ6NTE8 343 aa4.9□□□□□ -1.63
USP40-204ENST00000427947 KIAA0408Q6ZU52 694 aa4.9□□□□□ -1.63
USP40-204ENST00000427947 USP49Q70CQ1 688 aa4.9□□□□□ -1.63
USP40-204ENST00000427947 CYP2W1Q8TAV3 490 aa4.9□□□□□ -1.63
USP40-204ENST00000427947 POF1BQ8WVV4 589 aa4.9□□□□□ -1.63
USP40-204ENST00000427947 MUL1Q969V5 352 aa4.9□□□□□ -1.63
USP40-204ENST00000427947 TMEM41AQ96HV5 264 aa4.9□□□□□ -1.63
USP40-204ENST00000427947 PDLIM2Q96JY6 352 aa4.9□□□□□ -1.63
USP40-204ENST00000427947 FAM227BQ96M60 508 aa4.9□□□□□ -1.63
USP40-204ENST00000427947 GDF15Q99988 308 aa4.9□□□□□ -1.63
USP40-204ENST00000427947 SELENOOQ9BVL4 669 aa4.9□□□□□ -1.63
USP40-204ENST00000427947 TTLL2Q9BWV7 592 aa4.9□□□□□ -1.63
USP40-204ENST00000427947 ZCWPW1Q9H0M4 648 aa4.9□□□□□ -1.63
USP40-204ENST00000427947 ZBTB26Q9HCK0 441 aa4.9□□□□□ -1.63
USP40-204ENST00000427947 RGL1Q9NZL6 768 aa4.9□□□□□ -1.63
USP40-204ENST00000427947 RIMKLBQ9ULI2 386 aa4.9□□□□□ -1.63
USP40-204ENST00000427947 FER1L4A9Z1Z3 1794 aa4.9□□□□□ -1.63
USP40-204ENST00000427947 SRCAPQ6ZRS2 3230 aa4.9□□□□□ -1.63
USP40-204ENST00000427947 A0A087WV62 115 aa4.89□□□□□ -1.63
USP40-204ENST00000427947 EXOC5O00471 708 aa4.89□□□□□ -1.63
USP40-204ENST00000427947 CCNT2O60583 730 aaKnown RBP4.89□□□□□ -1.63
USP40-204ENST00000427947 SNX2O60749 519 aa4.89□□□□□ -1.63
USP40-204ENST00000427947 LMNAP02545 664 aaKnown RBP4.89□□□□□ -1.63
USP40-204ENST00000427947 ELFN1P0C7U0 828 aa4.89□□□□□ -1.63
USP40-204ENST00000427947 JUPP14923 745 aa4.89□□□□□ -1.63
USP40-204ENST00000427947 PECAM1P16284 738 aaPredicted RBP4.89□□□□□ -1.63
USP40-204ENST00000427947 ENGP17813 658 aa4.89□□□□□ -1.63
USP40-204ENST00000427947 RBL1P28749 1068 aa4.89□□□□□ -1.63
USP40-204ENST00000427947 CYP2C18P33260 490 aa4.89□□□□□ -1.63
USP40-204ENST00000427947 CCT8P50990 548 aa4.89□□□□□ -1.63
USP40-204ENST00000427947 RAB30Q15771 203 aa4.89□□□□□ -1.63
USP40-204ENST00000427947 ERCC6LQ2NKX8 1250 aa4.89□□□□□ -1.63
USP40-204ENST00000427947 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.89□□□□□ -1.63
USP40-204ENST00000427947 CLEC9AQ6UXN8 241 aa4.89□□□□□ -1.63
USP40-204ENST00000427947 C11orf44Q8N8P7 122 aa4.89□□□□□ -1.63
USP40-204ENST00000427947 ENAHQ8N8S7 591 aaPredicted RBP4.89□□□□□ -1.63
USP40-204ENST00000427947 ZNF527Q8NB42 609 aa4.89□□□□□ -1.63
USP40-204ENST00000427947 IPO4Q8TEX9 1081 aaKnown RBP4.89□□□□□ -1.63
USP40-204ENST00000427947 ZNF384Q8TF68 577 aa4.89□□□□□ -1.63
USP40-204ENST00000427947 NECTIN3Q9NQS3 549 aa4.89□□□□□ -1.63
USP40-204ENST00000427947 TM7SF3Q9NS93 570 aa4.89□□□□□ -1.63
USP40-204ENST00000427947 SERTAD4Q9NUC0 356 aa4.89□□□□□ -1.63
USP40-204ENST00000427947 TMOD4Q9NZQ9 345 aa4.89□□□□□ -1.63
USP40-204ENST00000427947 DMRT1Q9Y5R6 373 aa4.89□□□□□ -1.63
USP40-204ENST00000427947 H0YIZ8 118 aa4.88□□□□□ -1.63
USP40-204ENST00000427947 AP4M1O00189 453 aa4.88□□□□□ -1.63
USP40-204ENST00000427947 FFAR2O15552 330 aa4.88□□□□□ -1.63
USP40-204ENST00000427947 AKAP8O43823 692 aaKnown RBP4.88□□□□□ -1.63
USP40-204ENST00000427947 ARP10275 920 aa4.88□□□□□ -1.63
USP40-204ENST00000427947 CTGFP29279 349 aa4.88□□□□□ -1.63
USP40-204ENST00000427947 RARRES1P49788 294 aa4.88□□□□□ -1.63
USP40-204ENST00000427947 E2F1Q01094 437 aa4.88□□□□□ -1.63
USP40-204ENST00000427947 CYP1B1Q16678 543 aa4.88□□□□□ -1.63
USP40-204ENST00000427947 SLC5A9Q2M3M2 681 aa4.88□□□□□ -1.63
USP40-204ENST00000427947 ARHGAP15Q53QZ3 475 aa4.88□□□□□ -1.63
USP40-204ENST00000427947 GGT6Q6P531 493 aa4.88□□□□□ -1.63
USP40-204ENST00000427947 PCSK4Q6UW60 755 aa4.88□□□□□ -1.63
USP40-204ENST00000427947 OLFML1Q6UWY5 402 aa4.88□□□□□ -1.63
USP40-204ENST00000427947 Q6ZWC4 215 aa4.88□□□□□ -1.63
USP40-204ENST00000427947 PARS2Q7L3T8 475 aaKnown RBP4.88□□□□□ -1.63
USP40-204ENST00000427947 GRASPQ7Z6J2 395 aaPredicted RBP4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms