RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 TTLL12Q14166 644 aaPredicted RBP9.02□□□□□ -0.97
USP40-203ENST00000427112 PSMD6Q15008 389 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 SPDYE2Q495Y8 402 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 CES4AQ5XG92 561 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 LMNTD2Q8IXW0 634 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 MICALL2Q8IY33 904 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 KBTBD2Q8IY47 623 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 KATNAL2Q8IYT4 538 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 ATP11CQ8NB49 1132 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 NSUN6Q8TEA1 469 aaKnown RBP9.02□□□□□ -0.97
USP40-203ENST00000427112 P3H4Q92791 437 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 FAM149B1Q96BN6 582 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 RBM41Q96IZ5 413 aaKnown RBP9.02□□□□□ -0.97
USP40-203ENST00000427112 PEBP4Q96S96 227 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 TSC22D3Q99576 134 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 KCND2Q9NZV8 630 aa9.02□□□□□ -0.97
USP40-203ENST00000427112 ZC3H7BQ9UGR2 993 aaKnown RBP9.02□□□□□ -0.97
USP40-203ENST00000427112 PPP1R12AO14974 1030 aaPredicted RBP9.01□□□□□ -0.97
USP40-203ENST00000427112 DNAJC6O75061 913 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 DCTN3O75935 186 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 NPTXRO95502 500 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 KCNA2P16389 499 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 MOGSQ13724 837 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 RASIP1Q5U651 963 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 ANGEL2Q5VTE6 544 aaKnown RBP9.01□□□□□ -0.97
USP40-203ENST00000427112 IZUMO2Q6UXV1 221 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 ACOT1Q86TX2 421 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 VSIG10LQ86VR7 867 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 NUDCD3Q8IVD9 361 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 GBP7Q8N8V2 638 aaPredicted RBP9.01□□□□□ -0.97
USP40-203ENST00000427112 CLMNQ96JQ2 1002 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 FAM49AQ9H0Q0 323 aaPredicted RBP9.01□□□□□ -0.97
USP40-203ENST00000427112 RNPEPQ9H4A4 650 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 ZNRF3Q9ULT6 936 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 ATRNL1Q5VV63 1379 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 A0A0B4J269 797 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 P4HA2O15460 535 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 ZBED1O96006 694 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 C6orf222P0C671 652 aaPredicted RBP9.01□□□□□ -0.97
USP40-203ENST00000427112 ARSAP15289 507 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 SLC1A1P43005 524 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 BPIFB4P59827 614 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 ZNF200P98182 395 aaPredicted RBP9.01□□□□□ -0.97
USP40-203ENST00000427112 FBXO16Q8IX29 292 aaPredicted RBP9.01□□□□□ -0.97
USP40-203ENST00000427112 AGGF1Q8N302 714 aaeCLIP9.01□□□□□ -0.97
USP40-203ENST00000427112 NME8Q8N427 588 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 C12orf50Q8NA57 414 aaPredicted RBP9.01□□□□□ -0.97
USP40-203ENST00000427112 MAIP1Q8WWC4 291 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 RXFP2Q8WXD0 754 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 OXCT2Q9BYC2 517 aaPredicted RBP9.01□□□□□ -0.97
USP40-203ENST00000427112 SDCBP2Q9H190 292 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 KLK14Q9P0G3 267 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 PLA2G4CQ9UP65 541 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 C2CD2Q9Y426 696 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 SCINQ9Y6U3 715 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 SLX4Q8IY92 1834 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 ITM2AO43736 263 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 CREB3O43889 395 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 SMNDC1O75940 238 aaKnown RBP eCLIP9.01□□□□□ -0.97
USP40-203ENST00000427112 PRKCBP05771 671 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 KDELR1P24390 212 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 POLR2BP30876 1174 aaKnown RBP9.01□□□□□ -0.97
USP40-203ENST00000427112 STAT5BP51692 787 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 DPYSL3Q14195 570 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 TSNAXIP1Q2TAA8 658 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 TNFAIP8L3Q5GJ75 292 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 PLEKHA7Q6IQ23 1121 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 CMC1Q7Z7K0 106 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 RBM15BQ8NDT2 890 aaKnown RBP9.01□□□□□ -0.97
USP40-203ENST00000427112 DENND1AQ8TEH3 1009 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 SGF29Q96ES7 293 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 PDGFCQ9NRA1 345 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 USP18Q9UMW8 372 aa9.01□□□□□ -0.97
USP40-203ENST00000427112 NHSQ6T4R5 1651 aa9□□□□□ -0.97
USP40-203ENST00000427112 E9PBE3 544 aa9□□□□□ -0.97
USP40-203ENST00000427112 I3L4J1 428 aa9□□□□□ -0.97
USP40-203ENST00000427112 GSC2O15499 205 aa9□□□□□ -0.97
USP40-203ENST00000427112 PSTPIP1O43586 416 aa9□□□□□ -0.97
USP40-203ENST00000427112 KLHL41O60662 606 aa9□□□□□ -0.97
USP40-203ENST00000427112 CSH1P0DML2 217 aa9□□□□□ -0.97
USP40-203ENST00000427112 CSH2P0DML3 217 aa9□□□□□ -0.97
USP40-203ENST00000427112 MLH1P40692 756 aa9□□□□□ -0.97
USP40-203ENST00000427112 GLRBP48167 497 aa9□□□□□ -0.97
USP40-203ENST00000427112 CXCR3P49682 368 aa9□□□□□ -0.97
USP40-203ENST00000427112 NT5C2P49902 561 aa9□□□□□ -0.97
USP40-203ENST00000427112 ROR1Q01973 937 aa9□□□□□ -0.97
USP40-203ENST00000427112 GBE1Q04446 702 aa9□□□□□ -0.97
USP40-203ENST00000427112 PTP4A2Q12974 167 aa9□□□□□ -0.97
USP40-203ENST00000427112 USP4Q13107 963 aa9□□□□□ -0.97
USP40-203ENST00000427112 LRRC23Q53EV4 343 aaPredicted RBP9□□□□□ -0.97
USP40-203ENST00000427112 RNF43Q68DV7 783 aa9□□□□□ -0.97
USP40-203ENST00000427112 CROCCP2Q86T23 111 aa9□□□□□ -0.97
USP40-203ENST00000427112 EGFL6Q8IUX8 553 aa9□□□□□ -0.97
USP40-203ENST00000427112 MCPH1Q8NEM0 835 aa9□□□□□ -0.97
USP40-203ENST00000427112 TMC2Q8TDI7 906 aa9□□□□□ -0.97
USP40-203ENST00000427112 FAM136AQ96C01 138 aa9□□□□□ -0.97
USP40-203ENST00000427112 CAB39LQ9H9S4 337 aa9□□□□□ -0.97
USP40-203ENST00000427112 AKT3Q9Y243 479 aa9□□□□□ -0.97
USP40-203ENST00000427112 CNTNAP2Q9UHC6 1331 aa9□□□□□ -0.97
USP40-203ENST00000427112 CCDC189A1A4V9 331 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms