RNA–Protein interactions for RNA: ENST00000425413.5

UBR4-207, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 2,954 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-207ENST00000425413 ANKS4BQ8N8V4 417 aa12.08□□□□□ -0.48
UBR4-207ENST00000425413 MAML1Q92585 1016 aa12.08□□□□□ -0.48
UBR4-207ENST00000425413 EMID1Q96A84 441 aaPredicted RBP12.08□□□□□ -0.48
UBR4-207ENST00000425413 SNX27Q96L92 541 aa12.08□□□□□ -0.48
UBR4-207ENST00000425413 WDR83Q9BRX9 315 aaKnown RBP12.08□□□□□ -0.48
UBR4-207ENST00000425413 VRTNQ9H8Y1 702 aa12.08□□□□□ -0.48
UBR4-207ENST00000425413 SHOC2Q9UQ13 582 aa12.08□□□□□ -0.48
UBR4-207ENST00000425413 WDR91A4D1P6 747 aa12.08□□□□□ -0.48
UBR4-207ENST00000425413 KCNN4O15554 427 aa12.08□□□□□ -0.48
UBR4-207ENST00000425413 ACAT1P24752 427 aaKnown RBP12.08□□□□□ -0.48
UBR4-207ENST00000425413 PTPN7P35236 360 aa12.08□□□□□ -0.48
UBR4-207ENST00000425413 ARL4CP56559 192 aa12.08□□□□□ -0.48
UBR4-207ENST00000425413 NOTUMQ6P988 496 aa12.08□□□□□ -0.48
UBR4-207ENST00000425413 PNMA8AQ86V59 439 aaPredicted RBP12.08□□□□□ -0.48
UBR4-207ENST00000425413 IGDCC3Q8IVU1 814 aa12.08□□□□□ -0.48
UBR4-207ENST00000425413 TTC13Q8NBP0 860 aa12.08□□□□□ -0.48
UBR4-207ENST00000425413 BEST2Q8NFU1 509 aa12.08□□□□□ -0.48
UBR4-207ENST00000425413 PARK7Q99497 189 aaKnown RBP12.08□□□□□ -0.48
UBR4-207ENST00000425413 RSAD1Q9HA92 442 aa12.08□□□□□ -0.48
UBR4-207ENST00000425413 MORF4L1Q9UBU8 362 aa12.08□□□□□ -0.48
UBR4-207ENST00000425413 COL1A2P08123 1366 aa12.08□□□□□ -0.48
UBR4-207ENST00000425413 TRIP11Q15643 1979 aa12.08□□□□□ -0.48
UBR4-207ENST00000425413 ALOX15BO15296 676 aa12.07□□□□□ -0.48
UBR4-207ENST00000425413 CA4P22748 312 aa12.07□□□□□ -0.48
UBR4-207ENST00000425413 FOXN2P32314 431 aa12.07□□□□□ -0.48
UBR4-207ENST00000425413 SOX4Q06945 474 aaPredicted RBP12.07□□□□□ -0.48
UBR4-207ENST00000425413 ACTN3Q08043 901 aaPredicted RBP12.07□□□□□ -0.48
UBR4-207ENST00000425413 SMAD1Q15797 465 aaKnown RBP12.07□□□□□ -0.48
UBR4-207ENST00000425413 SPRYD7Q5W111 196 aa12.07□□□□□ -0.48
UBR4-207ENST00000425413 OLFML1Q6UWY5 402 aa12.07□□□□□ -0.48
UBR4-207ENST00000425413 ZNF410Q86VK4 478 aa12.07□□□□□ -0.48
UBR4-207ENST00000425413 FBF1Q8TES7 1133 aa12.07□□□□□ -0.48
UBR4-207ENST00000425413 SNRNP25Q9BV90 132 aaKnown RBP12.07□□□□□ -0.48
UBR4-207ENST00000425413 DHX35Q9H5Z1 703 aaKnown RBP12.07□□□□□ -0.48
UBR4-207ENST00000425413 ALG13Q9NP73 1137 aaKnown RBP12.07□□□□□ -0.48
UBR4-207ENST00000425413 RAB6BQ9NRW1 208 aa12.07□□□□□ -0.48
UBR4-207ENST00000425413 HAUS2Q9NVX0 235 aa12.07□□□□□ -0.48
UBR4-207ENST00000425413 SLC5A4Q9NY91 659 aa12.07□□□□□ -0.48
UBR4-207ENST00000425413 LOC102724159A0A0B4J2E5 919 aa12.07□□□□□ -0.48
UBR4-207ENST00000425413 DARSP14868 501 aaKnown RBP12.07□□□□□ -0.48
UBR4-207ENST00000425413 RPA3P35244 121 aaPredicted RBP12.07□□□□□ -0.48
UBR4-207ENST00000425413 BCAR1P56945 870 aa12.07□□□□□ -0.48
UBR4-207ENST00000425413 WDR4P57081 412 aaKnown RBP12.07□□□□□ -0.48
UBR4-207ENST00000425413 MFSD10Q14728 455 aa12.07□□□□□ -0.48
UBR4-207ENST00000425413 PWP2Q15269 919 aaKnown RBP12.07□□□□□ -0.48
UBR4-207ENST00000425413 DCAF4L1Q3SXM0 396 aa12.07□□□□□ -0.48
UBR4-207ENST00000425413 C9orf57Q5W0N0 161 aa12.07□□□□□ -0.48
UBR4-207ENST00000425413 IQSEC1Q6DN90 963 aa12.07□□□□□ -0.48
UBR4-207ENST00000425413 ANKRD23Q86SG2 305 aa12.07□□□□□ -0.48
UBR4-207ENST00000425413 TRABD2AQ86V40 505 aa12.07□□□□□ -0.48
UBR4-207ENST00000425413 NAT8LQ8N9F0 302 aa12.07□□□□□ -0.48
UBR4-207ENST00000425413 SLC2A14Q8TDB8 520 aa12.07□□□□□ -0.48
UBR4-207ENST00000425413 GTF3C2Q8WUA4 911 aaPredicted RBP12.07□□□□□ -0.48
UBR4-207ENST00000425413 CCT6BQ92526 530 aa12.07□□□□□ -0.48
UBR4-207ENST00000425413 FAM149B1Q96BN6 582 aa12.07□□□□□ -0.48
UBR4-207ENST00000425413 FAF2Q96CS3 445 aa12.07□□□□□ -0.48
UBR4-207ENST00000425413 ZFP42Q96MM3 310 aa12.07□□□□□ -0.48
UBR4-207ENST00000425413 NSRP1Q9H0G5 558 aaKnown RBP12.07□□□□□ -0.48
UBR4-207ENST00000425413 LGALS13Q9UHV8 139 aa12.07□□□□□ -0.48
UBR4-207ENST00000425413 FARP1Q9Y4F1 1045 aaPredicted RBP12.07□□□□□ -0.48
UBR4-207ENST00000425413 DOCK3Q8IZD9 2030 aa12.07□□□□□ -0.48
UBR4-207ENST00000425413 SMIM28A0A1B0GU29 152 aa12.06□□□□□ -0.48
UBR4-207ENST00000425413 CCT8L1PA6NM43 557 aa12.06□□□□□ -0.48
UBR4-207ENST00000425413 CLDN5O00501 218 aa12.06□□□□□ -0.48
UBR4-207ENST00000425413 FSBPO95073 299 aa12.06□□□□□ -0.48
UBR4-207ENST00000425413 RBL1P28749 1068 aa12.06□□□□□ -0.48
UBR4-207ENST00000425413 SCTRP47872 440 aa12.06□□□□□ -0.48
UBR4-207ENST00000425413 YWHAGP61981 247 aaKnown RBP eCLIP12.06□□□□□ -0.48
UBR4-207ENST00000425413 DNAJC3Q13217 504 aa12.06□□□□□ -0.48
UBR4-207ENST00000425413 PIGWQ7Z7B1 504 aa12.06□□□□□ -0.48
UBR4-207ENST00000425413 PDIK1LQ8N165 341 aa12.06□□□□□ -0.48
UBR4-207ENST00000425413 C2orf69Q8N8R5 385 aa12.06□□□□□ -0.48
UBR4-207ENST00000425413 KHSRPQ92945 711 aaKnown RBP eCLIP12.06□□□□□ -0.486e-7■■■□□ 17.3
UBR4-207ENST00000425413 CFAP36Q96G28 342 aa12.06□□□□□ -0.48
UBR4-207ENST00000425413 TRIM56Q9BRZ2 755 aaKnown RBP12.06□□□□□ -0.48
UBR4-207ENST00000425413 TMPRSS4Q9NRS4 437 aa12.06□□□□□ -0.48
UBR4-207ENST00000425413 MFHAS1Q9Y4C4 1052 aa12.06□□□□□ -0.48
UBR4-207ENST00000425413 FAM47DPA6NHR8 397 aa12.06□□□□□ -0.48
UBR4-207ENST00000425413 MEIS3P2A8K0S8 358 aa12.06□□□□□ -0.48
UBR4-207ENST00000425413 SNX3O60493 162 aa12.06□□□□□ -0.48
UBR4-207ENST00000425413 KRT4P19013 534 aa12.06□□□□□ -0.48
UBR4-207ENST00000425413 GNL1P36915 607 aaPredicted RBP12.06□□□□□ -0.48
UBR4-207ENST00000425413 ELK3P41970 407 aa12.06□□□□□ -0.48
UBR4-207ENST00000425413 SLC6A3Q01959 620 aa12.06□□□□□ -0.48
UBR4-207ENST00000425413 SNX17Q15036 470 aa12.06□□□□□ -0.48
UBR4-207ENST00000425413 KYAT1Q16773 422 aa12.06□□□□□ -0.48
UBR4-207ENST00000425413 FAM110CQ1W6H9 321 aa12.06□□□□□ -0.48
UBR4-207ENST00000425413 FBXO47Q5MNV8 452 aa12.06□□□□□ -0.48
UBR4-207ENST00000425413 ARHGEF18Q6ZSZ5 1173 aa12.06□□□□□ -0.48
UBR4-207ENST00000425413 YTHDF3Q7Z739 585 aaKnown RBP12.06□□□□□ -0.48
UBR4-207ENST00000425413 ZNF467Q7Z7K2 595 aaPredicted RBP12.06□□□□□ -0.48
UBR4-207ENST00000425413 CNPY4Q8N129 248 aa12.06□□□□□ -0.48
UBR4-207ENST00000425413 PLD5Q8N7P1 536 aa12.06□□□□□ -0.48
UBR4-207ENST00000425413 PCDH19Q8TAB3 1148 aa12.06□□□□□ -0.48
UBR4-207ENST00000425413 CCDC110Q8TBZ0 833 aa12.06□□□□□ -0.48
UBR4-207ENST00000425413 CKAP2Q8WWK9 683 aa12.06□□□□□ -0.48
UBR4-207ENST00000425413 TTC25Q96NG3 672 aa12.06□□□□□ -0.48
UBR4-207ENST00000425413 RNF157Q96PX1 679 aa12.06□□□□□ -0.48
UBR4-207ENST00000425413 PCDH18Q9HCL0 1135 aa12.06□□□□□ -0.48
UBR4-207ENST00000425413 SLCO1B3Q9NPD5 702 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms