RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 TNFAIP1Q13829 316 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 EFTUD2Q15029 972 aaKnown RBP eCLIP11.48□□□□□ -0.57
LIMS1-207ENST00000422797 MTERF2Q49AM1 385 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 MSS51Q4VC12 460 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 HP1BP3Q5SSJ5 553 aaPredicted RBP11.48□□□□□ -0.57
LIMS1-207ENST00000422797 ZC3H18Q86VM9 953 aaKnown RBP11.48□□□□□ -0.57
LIMS1-207ENST00000422797 CCDC60Q8IWA6 550 aaPredicted RBP11.48□□□□□ -0.57
LIMS1-207ENST00000422797 SCUBE1Q8IWY4 988 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 RTKN2Q8IZC4 609 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 TTC39CQ8N584 583 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 MCUQ8NE86 351 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 JADE3Q92613 823 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 USP6NLQ92738 828 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 GATA6Q92908 595 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 E2F7Q96AV8 911 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 MRRFQ96E11 262 aaKnown RBP11.48□□□□□ -0.57
LIMS1-207ENST00000422797 GBP5Q96PP8 586 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 SYT15Q9BQS2 421 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 KLC2Q9H0B6 622 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 C2orf40Q9H1Z8 148 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 ZNF302Q9NR11 478 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 HOMER2Q9NSB8 354 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 NRBP2Q9NSY0 501 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 NDE1Q9NXR1 346 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 PGAP2Q9UHJ9 254 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 CHMP2BQ9UQN3 213 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 PLLPQ9Y342 182 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 MAFBQ9Y5Q3 323 aaPredicted RBP11.48□□□□□ -0.57
LIMS1-207ENST00000422797 SLC4A7Q9Y6M7 1214 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 ANKRD33BA6NCL7 494 aa11.47□□□□□ -0.57
LIMS1-207ENST00000422797 KBTBD13C9JR72 458 aa11.47□□□□□ -0.57
LIMS1-207ENST00000422797 VWA5AO00534 786 aa11.47□□□□□ -0.57
LIMS1-207ENST00000422797 OGTO15294 1046 aa11.47□□□□□ -0.57
LIMS1-207ENST00000422797 TBX10O75333 385 aa11.47□□□□□ -0.57
LIMS1-207ENST00000422797 ZNF189O75820 626 aaPredicted RBP11.47□□□□□ -0.57
LIMS1-207ENST00000422797 KLHL2O95198 593 aa11.47□□□□□ -0.57
LIMS1-207ENST00000422797 SERPINA6P08185 405 aa11.47□□□□□ -0.57
LIMS1-207ENST00000422797 PYGBP11216 843 aa11.47□□□□□ -0.57
LIMS1-207ENST00000422797 GNAT1P11488 350 aa11.47□□□□□ -0.57
LIMS1-207ENST00000422797 GABRB2P47870 512 aa11.47□□□□□ -0.57
LIMS1-207ENST00000422797 CACNA2D1P54289 1103 aa11.47□□□□□ -0.57
LIMS1-207ENST00000422797 SESN3P58005 492 aa11.47□□□□□ -0.57
LIMS1-207ENST00000422797 ACTR3P61158 418 aa11.47□□□□□ -0.57
LIMS1-207ENST00000422797 PSMC1P62191 440 aaKnown RBP11.47□□□□□ -0.57
LIMS1-207ENST00000422797 FAAP100Q0VG06 881 aa11.47□□□□□ -0.57
LIMS1-207ENST00000422797 BAATQ14032 418 aaPredicted RBP11.47□□□□□ -0.57
LIMS1-207ENST00000422797 PDK2Q15119 407 aa11.47□□□□□ -0.57
LIMS1-207ENST00000422797 PDCD2Q16342 344 aaPredicted RBP11.47□□□□□ -0.57
LIMS1-207ENST00000422797 ZNF699Q32M78 642 aa11.47□□□□□ -0.57
LIMS1-207ENST00000422797 KBTBD12Q3ZCT8 623 aa11.47□□□□□ -0.57
LIMS1-207ENST00000422797 DARS2Q6PI48 645 aaKnown RBP11.47□□□□□ -0.57
LIMS1-207ENST00000422797 MTHFD1LQ6UB35 978 aa11.47□□□□□ -0.57
LIMS1-207ENST00000422797 TIFABQ6ZNK6 161 aa11.47□□□□□ -0.57
LIMS1-207ENST00000422797 RINLQ6ZS11 566 aa11.47□□□□□ -0.57
LIMS1-207ENST00000422797 CYS1Q717R9 158 aa11.47□□□□□ -0.57
LIMS1-207ENST00000422797 MYLK4Q86YV6 388 aaPredicted RBP11.47□□□□□ -0.57
LIMS1-207ENST00000422797 OR5B17Q8NGF7 314 aa11.47□□□□□ -0.57
LIMS1-207ENST00000422797 ACMSDQ8TDX5 336 aa11.47□□□□□ -0.57
LIMS1-207ENST00000422797 PTPRN2Q92932 1015 aa11.47□□□□□ -0.57
LIMS1-207ENST00000422797 PPP2R3CQ969Q6 453 aa11.47□□□□□ -0.57
LIMS1-207ENST00000422797 FAM167AQ96KS9 214 aa11.47□□□□□ -0.57
LIMS1-207ENST00000422797 FGD4Q96M96 766 aa11.47□□□□□ -0.57
LIMS1-207ENST00000422797 WDR83Q9BRX9 315 aaKnown RBP11.47□□□□□ -0.57
LIMS1-207ENST00000422797 TARS2Q9BW92 718 aaKnown RBP11.47□□□□□ -0.57
LIMS1-207ENST00000422797 GLIS2Q9BZE0 524 aaPredicted RBP11.47□□□□□ -0.57
LIMS1-207ENST00000422797 TRIM4Q9C037 500 aa11.47□□□□□ -0.57
LIMS1-207ENST00000422797 TMEM39BQ9GZU3 492 aa11.47□□□□□ -0.57
LIMS1-207ENST00000422797 ZWILCHQ9H900 591 aa11.47□□□□□ -0.57
LIMS1-207ENST00000422797 FBXO40Q9UH90 709 aa11.47□□□□□ -0.57
LIMS1-207ENST00000422797 ENO4A6NNW6 628 aa11.46□□□□□ -0.57
LIMS1-207ENST00000422797 B2RBV5 119 aa11.46□□□□□ -0.57
LIMS1-207ENST00000422797 TRIM49D1C9J1S8 452 aa11.46□□□□□ -0.57
LIMS1-207ENST00000422797 ENDOD1O94919 500 aa11.46□□□□□ -0.57
LIMS1-207ENST00000422797 IL18RAPO95256 599 aa11.46□□□□□ -0.57
LIMS1-207ENST00000422797 TRUB2O95900 331 aaKnown RBP11.46□□□□□ -0.57
LIMS1-207ENST00000422797 AOC1P19801 751 aa11.46□□□□□ -0.57
LIMS1-207ENST00000422797 OSBPP22059 807 aa11.46□□□□□ -0.57
LIMS1-207ENST00000422797 CRABP2P29373 138 aa11.46□□□□□ -0.57
LIMS1-207ENST00000422797 CDC25CP30307 473 aa11.46□□□□□ -0.57
LIMS1-207ENST00000422797 CRHR1P34998 444 aa11.46□□□□□ -0.57
LIMS1-207ENST00000422797 RFC1P35251 1148 aaPredicted RBP11.46□□□□□ -0.57
LIMS1-207ENST00000422797 GDF10P55107 478 aa11.46□□□□□ -0.57
LIMS1-207ENST00000422797 SOX10P56693 466 aa11.46□□□□□ -0.57
LIMS1-207ENST00000422797 WNT7BP56706 349 aa11.46□□□□□ -0.57
LIMS1-207ENST00000422797 TMPRSS15P98073 1019 aa11.46□□□□□ -0.57
LIMS1-207ENST00000422797 THOC5Q13769 683 aaKnown RBP11.46□□□□□ -0.57
LIMS1-207ENST00000422797 FAM160B1Q5W0V3 765 aa11.46□□□□□ -0.57
LIMS1-207ENST00000422797 ZBTB8OSQ8IWT0 167 aa11.46□□□□□ -0.57
LIMS1-207ENST00000422797 UNC45BQ8IWX7 931 aa11.46□□□□□ -0.57
LIMS1-207ENST00000422797 FAM71DQ8N9W8 422 aa11.46□□□□□ -0.57
LIMS1-207ENST00000422797 SPATA18Q8TC71 538 aa11.46□□□□□ -0.57
LIMS1-207ENST00000422797 FAF2Q96CS3 445 aa11.46□□□□□ -0.57
LIMS1-207ENST00000422797 MCRS1Q96EZ8 462 aa11.46□□□□□ -0.57
LIMS1-207ENST00000422797 ZBED3Q96IU2 234 aaPredicted RBP11.46□□□□□ -0.57
LIMS1-207ENST00000422797 ANKRD36BP1Q96IX9 119 aa11.46□□□□□ -0.57
LIMS1-207ENST00000422797 SERAC1Q96JX3 654 aa11.46□□□□□ -0.57
LIMS1-207ENST00000422797 FAM161BQ96MY7 647 aa11.46□□□□□ -0.57
LIMS1-207ENST00000422797 TBCBQ99426 244 aa11.46□□□□□ -0.57
LIMS1-207ENST00000422797 CENPKQ9BS16 269 aa11.46□□□□□ -0.57
LIMS1-207ENST00000422797 NMUR2Q9GZQ4 415 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms