RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 SNRNP35Q16560 246 aaKnown RBP8.62□□□□□ -1.03
VIM-202ENST00000421459 MAP7D1Q3KQU3 841 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 WDR72Q3MJ13 1102 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 TRIM61Q5EBN2 209 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 FOXD4L5Q5VV16 416 aaPredicted RBP8.62□□□□□ -1.03
VIM-202ENST00000421459 PAQR9Q6ZVX9 377 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 EPM2AIP1Q7L775 607 aaPredicted RBP8.62□□□□□ -1.03
VIM-202ENST00000421459 TMEM25Q86YD3 366 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 BBS7Q8IWZ6 715 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 PGBD3Q8N328 593 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 PHTF2Q8N3S3 785 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 FOXD4L4Q8WXT5 416 aaPredicted RBP8.62□□□□□ -1.03
VIM-202ENST00000421459 CGRRF1Q99675 332 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 SLC6A17Q9H1V8 727 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 BLZF1Q9H2G9 400 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 SMYD3Q9H7B4 428 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 CD93Q9NPY3 652 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 ARHGEF4Q9NR80 690 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 AGPAT3Q9NRZ7 376 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 GMIPQ9P107 970 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 BCCIPQ9P287 314 aaKnown RBP eCLIP8.62□□□□□ -1.03
VIM-202ENST00000421459 MTMR6Q9Y217 621 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 CHD6Q8TD26 2715 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 TCHHQ07283 1943 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 GREB1Q4ZG55 1949 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 RALGAPA1Q6GYQ0 2036 aa8.61□□□□□ -1.03
VIM-202ENST00000421459 A0A0A0MRY4 1105 aa8.61□□□□□ -1.03
VIM-202ENST00000421459 TBC1D3BA6NDS4 549 aa8.61□□□□□ -1.03
VIM-202ENST00000421459 TNFRSF10BO14763 440 aa8.61□□□□□ -1.03
VIM-202ENST00000421459 ALDH1A2O94788 518 aa8.61□□□□□ -1.03
VIM-202ENST00000421459 TBX18O95935 607 aa8.61□□□□□ -1.03
VIM-202ENST00000421459 APODP05090 189 aa8.61□□□□□ -1.03
VIM-202ENST00000421459 CEACAM1P13688 526 aa8.61□□□□□ -1.03
VIM-202ENST00000421459 GABRG2P18507 467 aa8.61□□□□□ -1.03
VIM-202ENST00000421459 YWHAQP27348 245 aa8.61□□□□□ -1.03
VIM-202ENST00000421459 GRIA2P42262 883 aa8.61□□□□□ -1.03
VIM-202ENST00000421459 TNNC1P63316 161 aa8.61□□□□□ -1.03
VIM-202ENST00000421459 ASIC1P78348 528 aa8.61□□□□□ -1.03
VIM-202ENST00000421459 CYP24A1Q07973 514 aa8.61□□□□□ -1.03
VIM-202ENST00000421459 PSMD6Q15008 389 aa8.61□□□□□ -1.03
VIM-202ENST00000421459 SURF1Q15526 300 aa8.61□□□□□ -1.03
VIM-202ENST00000421459 MAPRE1Q15691 268 aaKnown RBP8.61□□□□□ -1.03
VIM-202ENST00000421459 FOXD4L6Q3SYB3 417 aaPredicted RBP8.61□□□□□ -1.03
VIM-202ENST00000421459 FOXD4L3Q6VB84 417 aaPredicted RBP8.61□□□□□ -1.03
VIM-202ENST00000421459 SCARA5Q6ZMJ2 495 aa8.61□□□□□ -1.03
VIM-202ENST00000421459 LPCAT2Q7L5N7 544 aa8.61□□□□□ -1.03
VIM-202ENST00000421459 GRAMD1CQ8IYS0 662 aa8.61□□□□□ -1.03
VIM-202ENST00000421459 NUP93Q8N1F7 819 aa8.61□□□□□ -1.03
VIM-202ENST00000421459 B3GALNT2Q8NCR0 500 aa8.61□□□□□ -1.03
VIM-202ENST00000421459 ZNF507Q8TCN5 953 aa8.61□□□□□ -1.03
VIM-202ENST00000421459 SCFD1Q8WVM8 642 aa8.61□□□□□ -1.03
VIM-202ENST00000421459 FBXO32Q969P5 355 aa8.61□□□□□ -1.03
VIM-202ENST00000421459 DHX58Q96C10 678 aa8.61□□□□□ -1.03
VIM-202ENST00000421459 ACOX2Q99424 681 aa8.61□□□□□ -1.03
VIM-202ENST00000421459 MED10Q9BTT4 135 aa8.61□□□□□ -1.03
VIM-202ENST00000421459 GTPBP2Q9BX10 602 aaKnown RBP8.61□□□□□ -1.03
VIM-202ENST00000421459 ADAM33Q9BZ11 813 aa8.61□□□□□ -1.03
VIM-202ENST00000421459 XYLT2Q9H1B5 865 aa8.61□□□□□ -1.03
VIM-202ENST00000421459 POLMQ9NP87 494 aaPredicted RBP8.61□□□□□ -1.03
VIM-202ENST00000421459 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.61□□□□□ -1.03
VIM-202ENST00000421459 KBTBD4Q9NVX7 518 aa8.61□□□□□ -1.03
VIM-202ENST00000421459 KLK13Q9UKR3 277 aa8.61□□□□□ -1.03
VIM-202ENST00000421459 FREM2Q5SZK8 3169 aa8.61□□□□□ -1.03
VIM-202ENST00000421459 DENND4CQ5VZ89 1909 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 DMXL2Q8TDJ6 3036 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 NBEAQ8NFP9 2946 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 E2F8A0AVK6 867 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 SLC9A3R1O14745 358 aaPredicted RBP8.6□□□□□ -1.03
VIM-202ENST00000421459 TULP3O75386 442 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 ADH1CP00326 375 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 CFIP05156 583 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 CCDC130P13994 396 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 CSRP1P21291 193 aaKnown RBP8.6□□□□□ -1.03
VIM-202ENST00000421459 TNFRSF4P43489 277 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 PDE6CP51160 858 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 SLC5A3P53794 718 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 RPL6Q02878 288 aaKnown RBP8.6□□□□□ -1.03
VIM-202ENST00000421459 TRPC3Q13507 836 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 ANO4Q32M45 955 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 EOGTQ5NDL2 527 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 FAM26FQ5R3K3 315 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 C10orf76Q5T2E6 689 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 EGFLAMQ63HQ2 1017 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 SHC4Q6S5L8 630 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 ACOT1Q86TX2 421 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 FAM35AQ86V20 835 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 SYT12Q8IV01 421 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 ETFBKMTQ8IXQ9 262 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 KDF1Q8NAX2 398 aaPredicted RBP8.6□□□□□ -1.03
VIM-202ENST00000421459 LINC00301Q8NCQ3 95 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 ZMIZ2Q8NF64 920 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 CCDC26Q8TAB7 109 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 WHAMMQ8TF30 809 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 GATA6Q92908 595 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 P2RY11Q96G91 374 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 CAMK1GQ96NX5 476 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 SLITRK1Q96PX8 696 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 SMOQ99835 787 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 NUSAP1Q9BXS6 441 aaKnown RBP8.6□□□□□ -1.03
VIM-202ENST00000421459 ELOVL4Q9GZR5 314 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms