RNA–Protein interactions for RNA: ENST00000414981.2

HMGB3P23-201, Transcript of high mobility group box 3 pseudogene 23, humanhuman

BASIC

Gene HMGB3P23, Length 585 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P23-201ENST00000414981 COL3A1P02461 1466 aaPredicted RBP4.41□□□□□ -1.7
HMGB3P23-201ENST00000414981 CFTRP13569 1480 aa4.41□□□□□ -1.7
HMGB3P23-201ENST00000414981 RNF123Q5XPI4 1314 aa4.41□□□□□ -1.7
HMGB3P23-201ENST00000414981 CASKIN1Q8WXD9 1431 aa4.4□□□□□ -1.7
HMGB3P23-201ENST00000414981 LOC102723971A0A1B0GUV8 181 aa4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 HMGB1P1B2RPK0 211 aaPredicted RBP4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 TMEM233B4DJY2 109 aa4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 EXOC5O00471 708 aa4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 MYCLP12524 364 aaPredicted RBP4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 BRAFP15056 766 aa4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 ADORA2AP29274 412 aa4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 PRKAR1BP31321 381 aa4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 DEKP35659 375 aaKnown RBP4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 BCAT1P54687 386 aa4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 TPTEP56180 551 aa4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 TUBA4AP68366 448 aa4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 FAM193AP78312 1265 aa4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 POLD3Q15054 466 aaPredicted RBP4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 NPY5RQ15761 445 aa4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 LY6KQ17RY6 165 aa4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 PROSER3Q2NL68 480 aa4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 PTCHD3Q3KNS1 767 aa4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 CERCAMQ5T4B2 595 aa4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 ZDHHC24Q6UX98 284 aa4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 CAND1Q86VP6 1230 aaKnown RBP4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 CCDC146Q8IYE0 955 aa4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 SPARTQ8N0X7 666 aa4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 FAM156AQ8NDB6 213 aa4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 OR56A3Q8NH54 315 aa4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 LRTOMTQ8WZ04 291 aa4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 DPCDQ9BVM2 203 aaPredicted RBP4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 GBA2Q9HCG7 927 aaPredicted RBP4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 PRDM11Q9NQV5 511 aa4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 SH3BP4Q9P0V3 963 aa4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 AFF4Q9UHB7 1163 aaKnown RBP4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 DDX20Q9UHI6 824 aaKnown RBP4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 CCNL1Q9UK58 526 aaPredicted RBP4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 NAP1L2Q9ULW6 460 aaPredicted RBP4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 CDY1Q9Y6F8 540 aa4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 THOC2Q8NI27 1593 aaKnown RBP4.4□□□□□ -1.71
HMGB3P23-201ENST00000414981 FGD5Q6ZNL6 1462 aa4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 VSTM5A8MXK1 200 aa4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 H7C1Q1 480 aa4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 INO80B-WBP1J3KQ70 363 aa4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 M0R3H8 397 aa4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 PSMD9O00233 223 aa4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 TPP1O14773 563 aa4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 MGEA5O60502 916 aa4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 PTMAP06454 111 aaKnown RBP4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 ZKSCAN1P17029 563 aaPredicted RBP4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 BDNFP23560 247 aa4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 KLRC1P26715 233 aa4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 CERS1P27544 350 aa4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 ANP32AP39687 249 aaKnown RBP4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 CYP4F2P78329 520 aa4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 KIAA0753Q2KHM9 967 aa4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 TMEM63BQ5T3F8 832 aa4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 SLC9A4Q6AI14 798 aa4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 CYB5RLQ6IPT4 315 aa4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 CCDC149Q6ZUS6 474 aa4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 TSR2Q969E8 191 aaKnown RBP4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 MSLNLQ96KJ4 702 aa4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 C17orf80Q9BSJ5 609 aa4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 INO80BQ9C086 356 aaPredicted RBP4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 BHMT2Q9H2M3 363 aa4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 ZNF287Q9HBT7 754 aa4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 OBP2AQ9NY56 170 aa4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 COL20A1Q9P218 1284 aa4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 DNMT3BQ9UBC3 853 aaKnown RBP4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 OGDHLQ9ULD0 1010 aa4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 USP22Q9UPT9 525 aa4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 SNX14Q9Y5W7 946 aa4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 CUX1P39880 1505 aa4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 FER1L4A9Z1Z3 1794 aa4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 KAT6AQ92794 2004 aa4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 FRMPD2Q68DX3 1309 aaPredicted RBP4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 KTN1Q86UP2 1357 aaKnown RBP4.39□□□□□ -1.71
HMGB3P23-201ENST00000414981 FMN1Q68DA7 1419 aa4.38□□□□□ -1.71
HMGB3P23-201ENST00000414981 SMG6Q86US8 1419 aaKnown RBP4.38□□□□□ -1.71
HMGB3P23-201ENST00000414981 CNTLNQ9NXG0 1405 aa4.38□□□□□ -1.71
HMGB3P23-201ENST00000414981 PRRT4C9JH25 899 aa4.38□□□□□ -1.71
HMGB3P23-201ENST00000414981 RASSF9O75901 435 aa4.38□□□□□ -1.71
HMGB3P23-201ENST00000414981 CTGFP29279 349 aa4.38□□□□□ -1.71
HMGB3P23-201ENST00000414981 EPHA3P29320 983 aa4.38□□□□□ -1.71
HMGB3P23-201ENST00000414981 ABCG1P45844 678 aa4.38□□□□□ -1.71
HMGB3P23-201ENST00000414981 TBX4P57082 545 aa4.38□□□□□ -1.71
HMGB3P23-201ENST00000414981 SSBP2P81877 361 aaPredicted RBP4.38□□□□□ -1.71
HMGB3P23-201ENST00000414981 ARHGEF7Q14155 803 aa4.38□□□□□ -1.71
HMGB3P23-201ENST00000414981 GRM3Q14832 879 aa4.38□□□□□ -1.71
HMGB3P23-201ENST00000414981 C3orf38Q5JPI3 329 aa4.38□□□□□ -1.71
HMGB3P23-201ENST00000414981 PRAMEF17Q5VTA0 474 aa4.38□□□□□ -1.71
HMGB3P23-201ENST00000414981 NAPRTQ6XQN6 538 aa4.38□□□□□ -1.71
HMGB3P23-201ENST00000414981 TRIM72Q6ZMU5 477 aa4.38□□□□□ -1.71
HMGB3P23-201ENST00000414981 ZNF782Q6ZMW2 699 aaPredicted RBP4.38□□□□□ -1.71
HMGB3P23-201ENST00000414981 RINLQ6ZS11 566 aa4.38□□□□□ -1.71
HMGB3P23-201ENST00000414981 C14orf80Q86SX3 495 aa4.38□□□□□ -1.71
HMGB3P23-201ENST00000414981 SIRT6Q8N6T7 355 aa4.38□□□□□ -1.71
HMGB3P23-201ENST00000414981 DAZAP1Q96EP5 407 aaKnown RBP4.38□□□□□ -1.71
HMGB3P23-201ENST00000414981 LENG8Q96PV6 779 aaPredicted RBP4.38□□□□□ -1.71
HMGB3P23-201ENST00000414981 RPS6KC1Q96S38 1066 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms