RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 RCN2Q14257 317 aa13.97□□□□□ -0.17
VPS54-203ENST00000409558 MFSD5Q6N075 450 aa13.97□□□□□ -0.17
VPS54-203ENST00000409558 SYDE1Q6ZW31 735 aaPredicted RBP13.97□□□□□ -0.17
VPS54-203ENST00000409558 ARMC9Q7Z3E5 817 aa13.97□□□□□ -0.17
VPS54-203ENST00000409558 KDELC2Q7Z4H8 507 aa13.97□□□□□ -0.17
VPS54-203ENST00000409558 PPIL6Q8IXY8 311 aa13.97□□□□□ -0.17
VPS54-203ENST00000409558 OR6J1Q8NGC5 347 aa13.97□□□□□ -0.17
VPS54-203ENST00000409558 SHCBP1LQ9BZQ2 653 aa13.97□□□□□ -0.17
VPS54-203ENST00000409558 PRMT7Q9NVM4 692 aaPredicted RBP13.97□□□□□ -0.17
VPS54-203ENST00000409558 CPA4Q9UI42 421 aa13.97□□□□□ -0.17
VPS54-203ENST00000409558 CYB561D2O14569 222 aa13.96□□□□□ -0.17
VPS54-203ENST00000409558 TRUB2O95900 331 aaKnown RBP13.96□□□□□ -0.17
VPS54-203ENST00000409558 BGNP21810 368 aa13.96□□□□□ -0.17
VPS54-203ENST00000409558 AMPD1P23109 780 aa13.96□□□□□ -0.17
VPS54-203ENST00000409558 GPD2P43304 727 aa13.96□□□□□ -0.17
VPS54-203ENST00000409558 PITX1P78337 314 aaPredicted RBP13.96□□□□□ -0.17
VPS54-203ENST00000409558 TCEAL1Q15170 157 aa13.96□□□□□ -0.17
VPS54-203ENST00000409558 GIMAP7Q8NHV1 300 aa13.96□□□□□ -0.17
VPS54-203ENST00000409558 DEPDC1BQ8WUY9 529 aa13.96□□□□□ -0.17
VPS54-203ENST00000409558 APOL2Q9BQE5 337 aa13.96□□□□□ -0.17
VPS54-203ENST00000409558 DDX56Q9NY93 547 aaKnown RBP13.96□□□□□ -0.17
VPS54-203ENST00000409558 PSMC3IPQ9P2W1 217 aaPredicted RBP13.96□□□□□ -0.17
VPS54-203ENST00000409558 ATAD5Q96QE3 1844 aa13.96□□□□□ -0.17
VPS54-203ENST00000409558 LPXNO60711 386 aa13.96□□□□□ -0.17
VPS54-203ENST00000409558 CILPO75339 1184 aa13.96□□□□□ -0.17
VPS54-203ENST00000409558 NCALDP61601 193 aa13.96□□□□□ -0.17
VPS54-203ENST00000409558 GRIK4Q16099 956 aa13.96□□□□□ -0.17
VPS54-203ENST00000409558 FAM47CQ5HY64 1035 aa13.96□□□□□ -0.17
VPS54-203ENST00000409558 MTDHQ86UE4 582 aaKnown RBP13.96□□□□□ -0.17
VPS54-203ENST00000409558 FAM228AQ86W67 206 aa13.96□□□□□ -0.17
VPS54-203ENST00000409558 ATP11CQ8NB49 1132 aa13.96□□□□□ -0.17
VPS54-203ENST00000409558 HASPINQ8TF76 798 aa13.96□□□□□ -0.17
VPS54-203ENST00000409558 PCDH9Q9HC56 1237 aa13.96□□□□□ -0.17
VPS54-203ENST00000409558 FBXO6Q9NRD1 293 aaPredicted RBP13.96□□□□□ -0.17
VPS54-203ENST00000409558 CCL15-CCL14A0A0B4J2E2 113 aa13.96□□□□□ -0.17
VPS54-203ENST00000409558 P4HA1P13674 534 aa13.96□□□□□ -0.17
VPS54-203ENST00000409558 GEMIN4P57678 1058 aaKnown RBP13.96□□□□□ -0.17
VPS54-203ENST00000409558 CCL15Q16663 113 aa13.96□□□□□ -0.17
VPS54-203ENST00000409558 DENND5BQ6ZUT9 1274 aa13.96□□□□□ -0.17
VPS54-203ENST00000409558 LRRC37BQ96QE4 947 aa13.96□□□□□ -0.17
VPS54-203ENST00000409558 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.96□□□□□ -0.17
VPS54-203ENST00000409558 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.96□□□□□ -0.17
VPS54-203ENST00000409558 I3L4J1 428 aa13.96□□□□□ -0.18
VPS54-203ENST00000409558 LSM8O95777 96 aaKnown RBP13.96□□□□□ -0.18
VPS54-203ENST00000409558 PGGT1BP53609 377 aa13.96□□□□□ -0.18
VPS54-203ENST00000409558 MORF4L2Q15014 288 aa13.96□□□□□ -0.18
VPS54-203ENST00000409558 TTC30AQ86WT1 665 aa13.96□□□□□ -0.18
VPS54-203ENST00000409558 TP53INP2Q8IXH6 220 aa13.96□□□□□ -0.18
VPS54-203ENST00000409558 MED10Q9BTT4 135 aa13.96□□□□□ -0.18
VPS54-203ENST00000409558 A0A0G2JLL6 359 aaPredicted RBP13.95□□□□□ -0.18
VPS54-203ENST00000409558 TRIM49D1C9J1S8 452 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 RASSF9O75901 435 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 EDNRBP24530 442 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 DCAF6Q58WW2 860 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 PRRT2Q7Z6L0 340 aaPredicted RBP13.95□□□□□ -0.18
VPS54-203ENST00000409558 SPNS2Q8IVW8 549 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 RFWD2Q8NHY2 731 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 PTPRN2Q92932 1015 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 CENPTQ96BT3 561 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 PPP1R36Q96LQ0 422 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 ZFP42Q96MM3 310 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 LGMNQ99538 433 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 SNRNP25Q9BV90 132 aaKnown RBP13.95□□□□□ -0.18
VPS54-203ENST00000409558 PCMTD2Q9NV79 361 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 TNFSF13BQ9Y275 285 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 A6NJR5 290 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 CPP00450 1065 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 PHBP35232 272 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 RBP5P82980 135 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 ARHGAP1Q07960 439 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 AP1B1Q10567 949 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 SURF1Q15526 300 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 DPY19L2Q6NUT2 758 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 MPP5Q8N3R9 675 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 ARMC2Q8NEN0 867 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 GPRC5AQ8NFJ5 357 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 PRR11Q96HE9 360 aaPredicted RBP13.95□□□□□ -0.18
VPS54-203ENST00000409558 PLCD4Q9BRC7 762 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 WDR83Q9BRX9 315 aaKnown RBP13.95□□□□□ -0.18
VPS54-203ENST00000409558 FAM167BQ9BTA0 163 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 UNKQ9C0B0 810 aaKnown RBP13.95□□□□□ -0.18
VPS54-203ENST00000409558 ETNK2Q9NVF9 386 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 CXorf49A8MYA2 514 aaPredicted RBP13.95□□□□□ -0.18
VPS54-203ENST00000409558 B4GALT4O60513 344 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 CYP2B6P20813 491 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 EPHX2P34913 555 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 COPS2P61201 443 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 SH3D19Q5HYK7 790 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 CCDC62Q6P9F0 684 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 YTHDF3Q7Z739 585 aaKnown RBP13.95□□□□□ -0.18
VPS54-203ENST00000409558 PPP1R14CQ8TAE6 165 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 SLC35B2Q8TB61 432 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 SLC2A14Q8TDB8 520 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 AGAP11Q8TF27 550 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 USP6NLQ92738 828 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 KDM4CQ9H3R0 1056 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 UBP1Q9NZI7 540 aa13.95□□□□□ -0.18
VPS54-203ENST00000409558 ZC3H7BQ9UGR2 993 aaKnown RBP13.95□□□□□ -0.18
VPS54-203ENST00000409558 TCRBV9S1A1TA0A576 114 aa13.94□□□□□ -0.18
VPS54-203ENST00000409558 GOLGA8TH3BQL2 631 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms