RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 MROH9Q5TGP6 573 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 FAM171A1Q5VUB5 890 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 CASP10Q92851 521 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 BCL2L14Q9BZR8 327 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 MYLK2Q9H1R3 596 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 TUT1Q9H6E5 874 aaKnown RBP7.43□□□□□ -1.22
UPF2-203ENST00000397053 C17orf75Q9HAS0 396 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 SAE1Q9UBE0 346 aaPredicted RBP7.43□□□□□ -1.22
UPF2-203ENST00000397053 TDRKHQ9Y2W6 561 aaKnown RBP7.43□□□□□ -1.22
UPF2-203ENST00000397053 TRPC5OSA6NMA1 111 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 MSH4O15457 936 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 RPN2P04844 631 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 SERPINF2P08697 491 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 UMPSP11172 480 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 STX5Q13190 355 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 GALNTL6Q49A17 601 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 EPC2Q52LR7 807 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 CBWD3Q5JTY5 395 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 CBWD5Q5RIA9 395 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 WLSQ5T9L3 541 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 FBXL19Q6PCT2 694 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 DOK6Q6PKX4 331 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 KLHL24Q6TFL4 600 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 SGMS1Q86VZ5 419 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 MIER2Q8N344 545 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 WDR36Q8NI36 951 aaKnown RBP7.43□□□□□ -1.22
UPF2-203ENST00000397053 SLC35G2Q8TBE7 412 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 FEZF2Q8TBJ5 459 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 HPS3Q969F9 1004 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 RNFT2Q96EX2 444 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 OSMRQ99650 979 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 OMDQ99983 421 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 MTG1Q9BT17 334 aaPredicted RBP7.43□□□□□ -1.22
UPF2-203ENST00000397053 CNPPD1Q9BV87 410 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 PPCSQ9HAB8 311 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 A0A087WZ62 844 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 A0A1W2PQC6 194 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 ZBTB39O15060 712 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 NBNO60934 754 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 POMCP01189 267 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 DYNC1I2Q13409 638 aaKnown RBP7.43□□□□□ -1.22
UPF2-203ENST00000397053 GNA13Q14344 377 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 MIIPQ5JXC2 388 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 TTC23Q5W5X9 447 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 GSPT2Q8IYD1 628 aaKnown RBP7.43□□□□□ -1.22
UPF2-203ENST00000397053 NACC2Q96BF6 587 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 FAM167BQ9BTA0 163 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 NEK6Q9HC98 313 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 SH3BP4Q9P0V3 963 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 UGGT1Q9NYU2 1555 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 ITSN2Q9NZM3 1697 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 CHURC1-FNTBB4DL54 471 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 TEX33O43247 280 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 FBXO21O94952 628 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 AKR1A1P14550 325 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 FDFT1P37268 417 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 RAB27AP51159 221 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 SNRPFP62306 86 aaKnown RBP7.42□□□□□ -1.22
UPF2-203ENST00000397053 IKBKEQ14164 716 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 ACOX1Q15067 660 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 TRIP10Q15642 601 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 SPATA21Q7Z572 469 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 SCAIQ8N9R8 606 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 FAM71DQ8N9W8 422 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 ST13P5Q8NFI4 369 aaPredicted RBP7.42□□□□□ -1.22
UPF2-203ENST00000397053 OSBPL1AQ9BXW6 950 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 ATP13A1Q9HD20 1204 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 NPHS2Q9NP85 383 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 PDGFCQ9NRA1 345 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 CRYL1Q9Y2S2 319 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 ATP7BP35670 1465 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 NEO1Q92859 1461 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 JCHAINP01591 159 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 VTNP04004 478 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 BCAT1P54687 386 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 CHRNB3Q05901 458 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 BOP1Q14137 746 aaKnown RBP7.42□□□□□ -1.22
UPF2-203ENST00000397053 TAF13Q15543 124 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 SLC18A3Q16572 532 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 SEZ6Q53EL9 994 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 GALNT4Q8N4A0 578 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 CNBD2Q96M20 576 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 FAM118BQ9BPY3 351 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 SENP6Q9GZR1 1112 aaPredicted RBP7.42□□□□□ -1.22
UPF2-203ENST00000397053 KLHL25Q9H0H3 589 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 NT5MQ9NPB1 228 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 SAC3D1A6NKF1 404 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 TCP11X1B4DZS4 312 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 SLC9A3R1O14745 358 aaPredicted RBP7.42□□□□□ -1.22
UPF2-203ENST00000397053 NKRFO15226 690 aaKnown RBP eCLIP7.42□□□□□ -1.22
UPF2-203ENST00000397053 KRT6AP02538 564 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 KRT6BP04259 564 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 PRR29P0C7W0 189 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 KRT6CP48668 564 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 TUFMP49411 452 aaKnown RBP7.42□□□□□ -1.22
UPF2-203ENST00000397053 SLC26A2P50443 739 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 PGS1Q32NB8 556 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 FAXCQ5TGI0 409 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 TAF2Q6P1X5 1199 aa7.42□□□□□ -1.22
UPF2-203ENST00000397053 NLRP9Q7RTR0 991 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms