RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 EPB41L1Q9H4G0 881 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 SSU72Q9NP77 194 aaKnown RBP11.63□□□□□ -0.55
CUX1-204ENST00000393824 NPHS2Q9NP85 383 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 CHST7Q9NS84 486 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 WASF2Q9Y6W5 498 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 EXOC1LA0A1B0GW35 172 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 CFAP69A5D8W1 941 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 SEPT4O43236 478 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 TPD52L2O43399 206 aaKnown RBP11.63□□□□□ -0.55
CUX1-204ENST00000393824 ATP9BO43861 1147 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 INHAP05111 366 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 RARBP10826 455 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 PLS3P13797 630 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 CA4P22748 312 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 GLRA2P23416 452 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 ADCY8P40145 1251 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 MCCD1P59942 119 aaPredicted RBP11.63□□□□□ -0.55
CUX1-204ENST00000393824 ZNF200P98182 395 aaPredicted RBP11.63□□□□□ -0.55
CUX1-204ENST00000393824 DEUP1Q05D60 604 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 MAP7Q14244 749 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 FSCN1Q16658 493 aaKnown RBP11.63□□□□□ -0.55
CUX1-204ENST00000393824 ARHGAP44Q17R89 818 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 FAM91A1Q658Y4 838 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 TAS1R3Q7RTX0 852 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 ZSWIM2Q8NEG5 633 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 SLC20A1Q8WUM9 679 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 PWWP2AQ96N64 755 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 SETD4Q9NVD3 440 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 NDUFA13Q9P0J0 144 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 LAMA3Q16787 3333 aa11.62□□□□□ -0.55
CUX1-204ENST00000393824 RANBP2P49792 3224 aaKnown RBP11.62□□□□□ -0.55
CUX1-204ENST00000393824 SMIM31A0A1B0GVY4 71 aa11.62□□□□□ -0.55
CUX1-204ENST00000393824 TTLL13PA6NNM8 815 aa11.62□□□□□ -0.55
CUX1-204ENST00000393824 ADAMTS4O75173 837 aa11.62□□□□□ -0.55
CUX1-204ENST00000393824 MAFO75444 373 aaPredicted RBP11.62□□□□□ -0.55
CUX1-204ENST00000393824 CSDE1O75534 798 aaKnown RBP11.62□□□□□ -0.55
CUX1-204ENST00000393824 C22orf31O95567 290 aa11.62□□□□□ -0.55
CUX1-204ENST00000393824 F2P00734 622 aa11.62□□□□□ -0.55
CUX1-204ENST00000393824 ANPEPP15144 967 aa11.62□□□□□ -0.55
CUX1-204ENST00000393824 DESP17661 470 aa11.62□□□□□ -0.55
CUX1-204ENST00000393824 MAGEA4P43358 317 aa11.62□□□□□ -0.55
CUX1-204ENST00000393824 USP46P62068 366 aa11.62□□□□□ -0.55
CUX1-204ENST00000393824 PKN2Q16513 984 aaKnown RBP11.62□□□□□ -0.55
CUX1-204ENST00000393824 CXCL17Q6UXB2 119 aa11.62□□□□□ -0.55
CUX1-204ENST00000393824 IZUMO2Q6UXV1 221 aa11.62□□□□□ -0.55
CUX1-204ENST00000393824 ZNF276Q8N554 614 aa11.62□□□□□ -0.55
CUX1-204ENST00000393824 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.62□□□□□ -0.552e-6■■■■■ 29.2
CUX1-204ENST00000393824 PDCD7Q8N8D1 485 aaKnown RBP11.62□□□□□ -0.55
CUX1-204ENST00000393824 IRGQQ8WZA9 623 aa11.62□□□□□ -0.55
CUX1-204ENST00000393824 SKA1Q96BD8 255 aa11.62□□□□□ -0.55
CUX1-204ENST00000393824 PPCSQ9HAB8 311 aa11.62□□□□□ -0.55
CUX1-204ENST00000393824 ZDHHC7Q9NXF8 308 aa11.62□□□□□ -0.55
CUX1-204ENST00000393824 HSFX1Q9UBD0 423 aa11.62□□□□□ -0.55
CUX1-204ENST00000393824 HEY2Q9UBP5 337 aa11.62□□□□□ -0.55
CUX1-204ENST00000393824 GTF3C4Q9UKN8 822 aa11.62□□□□□ -0.55
CUX1-204ENST00000393824 IGKV6-21A0A0C4DH24 114 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 K7ENM7 598 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 DUSP11O75319 330 aaKnown RBP11.61□□□□□ -0.55
CUX1-204ENST00000393824 TMCC1O94876 653 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 HMGCRP04035 888 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 VAV1P15498 845 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 RRM1P23921 792 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 PURAQ00577 322 aaKnown RBP11.61□□□□□ -0.55
CUX1-204ENST00000393824 ALCAMQ13740 583 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 GNASQ5JWF2 1037 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 ACAD11Q709F0 780 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 PRUNE1Q86TP1 453 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 NOP9Q86U38 636 aaKnown RBP11.61□□□□□ -0.55
CUX1-204ENST00000393824 C12orf56Q8IXR9 622 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 CCDC89Q8N998 374 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 TMEM161BQ8NDZ6 487 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 ZNF564Q8TBZ8 553 aaPredicted RBP11.61□□□□□ -0.55
CUX1-204ENST00000393824 PRPF31Q8WWY3 499 aaKnown RBP11.61□□□□□ -0.55
CUX1-204ENST00000393824 SLC7A3Q8WY07 619 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 PPP1R14BQ96C90 147 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 OSBPL8Q9BZF1 889 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 DCLK3Q9C098 648 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 PHACTR1Q9C0D0 580 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 UBE2TQ9NPD8 197 aaPredicted RBP11.61□□□□□ -0.55
CUX1-204ENST00000393824 NRBP2Q9NSY0 501 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 SUN2Q9UH99 717 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 MTO1Q9Y2Z2 717 aaKnown RBP11.61□□□□□ -0.55
CUX1-204ENST00000393824 DKC1O60832 514 aaKnown RBP eCLIP11.61□□□□□ -0.551e-7■■■■■ 34.5
CUX1-204ENST00000393824 TGDSO95455 350 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 ITGA2BP08514 1039 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 MYL3P08590 195 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 SPATA31D3P0C874 917 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 MAPTP10636 758 aaKnown RBP11.61□□□□□ -0.55
CUX1-204ENST00000393824 ESRRAP11474 423 aaPredicted RBP11.61□□□□□ -0.55
CUX1-204ENST00000393824 KRT15P19012 456 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 ARL2P36404 184 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 CETN2P41208 172 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 ITGA9Q13797 1035 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 GRM2Q14416 872 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 MAPK6Q16659 721 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 LVRNQ6Q4G3 990 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 SPATA31D4Q6ZUB0 917 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 NET1Q7Z628 596 aaPredicted RBP11.61□□□□□ -0.55
CUX1-204ENST00000393824 SPATA24Q86W54 205 aa11.61□□□□□ -0.55
CUX1-204ENST00000393824 ZCCHC9Q8N567 271 aaKnown RBP11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms