RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 TMEM169Q96HH4 297 aa13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 SMAD5Q99717 465 aaKnown RBP13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 WDR41Q9HAD4 459 aa13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 CHST12Q9NRB3 414 aa13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 RPS6KL1Q9Y6S9 549 aa13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 POLR1AO95602 1720 aaPredicted RBP13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 NCF1BA6NI72 391 aaPredicted RBP13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 NCF1CA8MVU1 366 aaPredicted RBP13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 TEX28O15482 410 aa13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 AP1G2O75843 785 aa13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 F9P00740 461 aa13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 NFICP08651 508 aa13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 NCF1P14598 390 aaPredicted RBP13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 MRPS31Q92665 395 aaKnown RBP13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 PRR23AA6NEV1 266 aa13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 RXRGP48443 463 aa13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 CCNG1P51959 295 aa13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 PSMC6P62333 389 aa13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 SLC22A9Q8IVM8 553 aa13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 L3MBTL3Q96JM7 780 aaPredicted RBP13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 SIKE1Q9BRV8 207 aa13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 NLNQ9BYT8 704 aa13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 LOC100653049A0A140TA62 436 aa13.21□□□□□ -0.3
CCDC88C-204ENST00000389857 KRT34O76011 436 aa13.21□□□□□ -0.3
CCDC88C-204ENST00000389857 PDHBP11177 359 aa13.21□□□□□ -0.3
CCDC88C-204ENST00000389857 RPA1P27694 616 aa13.21□□□□□ -0.3
CCDC88C-204ENST00000389857 PBLDP30039 288 aaPredicted RBP13.21□□□□□ -0.3
CCDC88C-204ENST00000389857 FMR1Q06787 632 aaKnown RBP eCLIP13.21□□□□□ -0.3
CCDC88C-204ENST00000389857 PLCL1Q15111 1095 aa13.21□□□□□ -0.3
CCDC88C-204ENST00000389857 SEL1L3Q68CR1 1132 aa13.21□□□□□ -0.3
CCDC88C-204ENST00000389857 SLFN11Q7Z7L1 901 aa13.21□□□□□ -0.3
CCDC88C-204ENST00000389857 KIF2BQ8N4N8 673 aa13.21□□□□□ -0.3
CCDC88C-204ENST00000389857 LRRC71Q8N4P6 559 aa13.21□□□□□ -0.3
CCDC88C-204ENST00000389857 OR2W6PQ8NHA6 318 aa13.21□□□□□ -0.3
CCDC88C-204ENST00000389857 OSCP1Q8WVF1 389 aa13.21□□□□□ -0.3
CCDC88C-204ENST00000389857 OLFM1Q99784 485 aa13.21□□□□□ -0.3
CCDC88C-204ENST00000389857 CCDC3Q9BQI4 270 aa13.21□□□□□ -0.3
CCDC88C-204ENST00000389857 SPRTNQ9H040 489 aaPredicted RBP13.21□□□□□ -0.3
CCDC88C-204ENST00000389857 WHRNQ9P202 907 aa13.21□□□□□ -0.3
CCDC88C-204ENST00000389857 REREQ9P2R6 1566 aa13.21□□□□□ -0.3
CCDC88C-204ENST00000389857 ITGALP20701 1170 aa13.21□□□□□ -0.3
CCDC88C-204ENST00000389857 PPP2R1BP30154 601 aa13.21□□□□□ -0.3
CCDC88C-204ENST00000389857 DDX39BQ13838 428 aaKnown RBP13.21□□□□□ -0.3
CCDC88C-204ENST00000389857 NFYCQ13952 458 aa13.21□□□□□ -0.3
CCDC88C-204ENST00000389857 NEK10Q6ZWH5 1172 aa13.21□□□□□ -0.3
CCDC88C-204ENST00000389857 C1orf131Q8NDD1 294 aaKnown RBP13.21□□□□□ -0.3
CCDC88C-204ENST00000389857 FAM45AQ8TCE6 357 aa13.21□□□□□ -0.3
CCDC88C-204ENST00000389857 ZIM3Q96PE6 472 aa13.21□□□□□ -0.3
CCDC88C-204ENST00000389857 KLF6Q99612 283 aaPredicted RBP13.21□□□□□ -0.3
CCDC88C-204ENST00000389857 PI4K2AQ9BTU6 479 aa13.21□□□□□ -0.3
CCDC88C-204ENST00000389857 KLHL31Q9H511 634 aa13.21□□□□□ -0.3
CCDC88C-204ENST00000389857 VTA1Q9NP79 307 aa13.21□□□□□ -0.3
CCDC88C-204ENST00000389857 CCL15-CCL14A0A0B4J2E2 113 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 GNG14A0A1W2PPG7 69 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 SAC3D1A6NKF1 404 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 E7ENQ6 273 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 TARSP26639 723 aaKnown RBP13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 CCL15Q16663 113 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 GNASQ5JWF2 1037 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 BNC2Q6ZN30 1099 aaPredicted RBP13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 SLC44A2Q8IWA5 706 aaPredicted RBP13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 VPS33AQ96AX1 596 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 GPRASP2Q96D09 838 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 PPP1R10Q96QC0 940 aaKnown RBP13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 NDUFA13Q9P0J0 144 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 GRIN3BO60391 1043 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 ILF2Q12905 390 aaKnown RBP13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 SF3B3Q15393 1217 aaKnown RBP13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 BRINP3Q76B58 766 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 SH2D3AQ9BRG2 576 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 GLI2P10070 1586 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 PSMD12O00232 456 aaPredicted RBP13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 SYNCRIPO60506 623 aaKnown RBP13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 TCF7P36402 384 aaPredicted RBP13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 MTA1Q13330 715 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 SLC29A2Q14542 456 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 ARID3BQ8IVW6 561 aaPredicted RBP13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 MOSPD2Q8NHP6 518 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 TPCN2Q8NHX9 752 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 FAM111AQ96PZ2 611 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 CELF4Q9BZC1 486 aaKnown RBP13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 LRRC40Q9H9A6 602 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 AVENQ9NQS1 362 aaPredicted RBP13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 FAM153AQ9UHL3 310 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 SKAP2O75563 359 aaPredicted RBP13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 FBXO21O94952 628 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 CPSF4O95639 269 aaKnown RBP13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 RBP1P09455 135 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 ATP6V1B1P15313 513 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 TFE3P19532 575 aaPredicted RBP13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 THPOP40225 353 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 ATP6AP1LQ52LC2 224 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 APBB2Q92870 758 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 NAT9Q9BTE0 207 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 SERHL2Q9H4I8 314 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 SERHLQ9NQF3 203 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 MIEF1Q9NQG6 463 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 COMMD8Q9NX08 183 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 PHTF1Q9UMS5 762 aa13.2□□□□□ -0.3
CCDC88C-204ENST00000389857 ABCA8O94911 1581 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms