RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 CHURC1Q8WUH1 139 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 TDRD1Q9BXT4 1180 aaKnown RBP9.01□□□□□ -0.97
LIG3-202ENST00000378526 PUS7LQ9H0K6 701 aaKnown RBP9.01□□□□□ -0.97
LIG3-202ENST00000378526 ATXN3LQ9H3M9 355 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 CCDC86Q9H6F5 360 aaKnown RBP9.01□□□□□ -0.97
LIG3-202ENST00000378526 CDH7Q9ULB5 785 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 SSR3Q9UNL2 185 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 FAM240BA0A1B0GVZ2 78 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 TSTD3H0UI37 97 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 ATP9BO43861 1147 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 PPP2R1BP30154 601 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 CCDC58Q4VC31 144 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 HECTD3Q5T447 861 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 GARNL3Q5VVW2 1013 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 UTS2BQ765I0 119 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 MAGEC3Q8TD91 643 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 SETDB2Q96T68 719 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 NRBP2Q9NSY0 501 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 ARHGEF38Q9NXL2 777 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 NDUFAF4Q9P032 175 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 PTGES3LE9PB15 166 aa9□□□□□ -0.97
LIG3-202ENST00000378526 PSMD11O00231 422 aa9□□□□□ -0.97
LIG3-202ENST00000378526 ATP1A1P05023 1023 aaKnown RBP9□□□□□ -0.97
LIG3-202ENST00000378526 MYL9P24844 172 aa9□□□□□ -0.97
LIG3-202ENST00000378526 SOAT1P35610 550 aa9□□□□□ -0.97
LIG3-202ENST00000378526 ARPINQ7Z6K5 226 aa9□□□□□ -0.97
LIG3-202ENST00000378526 JARID2Q92833 1246 aaPredicted RBP9□□□□□ -0.97
LIG3-202ENST00000378526 ROGDIQ9GZN7 287 aa9□□□□□ -0.97
LIG3-202ENST00000378526 ZNF304Q9HCX3 659 aa9□□□□□ -0.97
LIG3-202ENST00000378526 LDOC1O95751 146 aaPredicted RBP9□□□□□ -0.97
LIG3-202ENST00000378526 CSN2P05814 226 aa9□□□□□ -0.97
LIG3-202ENST00000378526 CHRNGP07510 517 aa9□□□□□ -0.97
LIG3-202ENST00000378526 YES1P07947 543 aa9□□□□□ -0.97
LIG3-202ENST00000378526 FAM76BQ5HYJ3 339 aa9□□□□□ -0.97
LIG3-202ENST00000378526 SULT1C3Q6IMI6 304 aa9□□□□□ -0.97
LIG3-202ENST00000378526 OTOAQ7RTW8 1153 aa9□□□□□ -0.97
LIG3-202ENST00000378526 DEPDC4Q8N2C3 294 aa9□□□□□ -0.97
LIG3-202ENST00000378526 FSTL5Q8N475 847 aaPredicted RBP9□□□□□ -0.97
LIG3-202ENST00000378526 LSM14AQ8ND56 463 aaKnown RBP9□□□□□ -0.97
LIG3-202ENST00000378526 MTG1Q9BT17 334 aaPredicted RBP9□□□□□ -0.97
LIG3-202ENST00000378526 DGCR6LQ9BY27 220 aa9□□□□□ -0.97
LIG3-202ENST00000378526 UNKQ9C0B0 810 aaKnown RBP9□□□□□ -0.97
LIG3-202ENST00000378526 KMT5AQ9NQR1 393 aa9□□□□□ -0.97
LIG3-202ENST00000378526 PNO1Q9NRX1 252 aaKnown RBP9□□□□□ -0.97
LIG3-202ENST00000378526 SORCS3Q9UPU3 1222 aa9□□□□□ -0.97
LIG3-202ENST00000378526 ZFYVE9O95405 1425 aa9□□□□□ -0.97
LIG3-202ENST00000378526 UBOX5O94941 541 aa9□□□□□ -0.97
LIG3-202ENST00000378526 SEC24CP53992 1094 aa9□□□□□ -0.97
LIG3-202ENST00000378526 PTGES3Q15185 160 aaKnown RBP9□□□□□ -0.97
LIG3-202ENST00000378526 RESP18Q5W5W9 173 aa9□□□□□ -0.97
LIG3-202ENST00000378526 ZNF613Q6PF04 617 aa9□□□□□ -0.97
LIG3-202ENST00000378526 ARID3BQ8IVW6 561 aaPredicted RBP9□□□□□ -0.97
LIG3-202ENST00000378526 DCUN1D1Q96GG9 259 aa9□□□□□ -0.97
LIG3-202ENST00000378526 APOL2Q9BQE5 337 aa9□□□□□ -0.97
LIG3-202ENST00000378526 SYNDIG1Q9H7V2 258 aa9□□□□□ -0.97
LIG3-202ENST00000378526 COPS7BQ9H9Q2 264 aaPredicted RBP9□□□□□ -0.97
LIG3-202ENST00000378526 FARSAQ9Y285 508 aaKnown RBP9□□□□□ -0.97
LIG3-202ENST00000378526 DGKIO75912 1065 aa9□□□□□ -0.97
LIG3-202ENST00000378526 APRTP07741 180 aa9□□□□□ -0.97
LIG3-202ENST00000378526 GJA1P17302 382 aa9□□□□□ -0.97
LIG3-202ENST00000378526 SDC2P34741 201 aa9□□□□□ -0.97
LIG3-202ENST00000378526 ARPP19P56211 112 aa9□□□□□ -0.97
LIG3-202ENST00000378526 PWP1Q13610 501 aa9□□□□□ -0.97
LIG3-202ENST00000378526 MAPK6Q16659 721 aa9□□□□□ -0.97
LIG3-202ENST00000378526 OR6B2Q6IFH4 312 aa9□□□□□ -0.97
LIG3-202ENST00000378526 KLHL35Q6PF15 583 aa9□□□□□ -0.97
LIG3-202ENST00000378526 SFRP1Q8N474 314 aa9□□□□□ -0.97
LIG3-202ENST00000378526 UTP15Q8TED0 518 aaKnown RBP9□□□□□ -0.97
LIG3-202ENST00000378526 HEXIM2Q96MH2 286 aaKnown RBP9□□□□□ -0.97
LIG3-202ENST00000378526 WDR11Q9BZH6 1224 aa9□□□□□ -0.97
LIG3-202ENST00000378526 CATSPERZQ9NTU4 200 aa9□□□□□ -0.97
LIG3-202ENST00000378526 CLN6Q9NWW5 311 aa9□□□□□ -0.97
LIG3-202ENST00000378526 CROTQ9UKG9 612 aa9□□□□□ -0.97
LIG3-202ENST00000378526 CDH9Q9ULB4 789 aa9□□□□□ -0.97
LIG3-202ENST00000378526 STAP1Q9ULZ2 295 aa9□□□□□ -0.97
LIG3-202ENST00000378526 ERGIC3Q9Y282 383 aa9□□□□□ -0.97
LIG3-202ENST00000378526 INO80B-WBP1J3KQ70 363 aa9□□□□□ -0.97
LIG3-202ENST00000378526 TPST1O60507 370 aa9□□□□□ -0.97
LIG3-202ENST00000378526 NAMPTP43490 491 aa9□□□□□ -0.97
LIG3-202ENST00000378526 RAB5BP61020 215 aa9□□□□□ -0.97
LIG3-202ENST00000378526 GTF2H3Q13889 308 aa9□□□□□ -0.97
LIG3-202ENST00000378526 CAMK1Q14012 370 aa9□□□□□ -0.97
LIG3-202ENST00000378526 PDK3Q15120 406 aa9□□□□□ -0.97
LIG3-202ENST00000378526 ALFQ53S48 1182 aa9□□□□□ -0.97
LIG3-202ENST00000378526 TNNI3KQ59H18 835 aa9□□□□□ -0.97
LIG3-202ENST00000378526 TMC4Q7Z404 712 aa9□□□□□ -0.97
LIG3-202ENST00000378526 GPALPP1Q8IXQ4 340 aa9□□□□□ -0.97
LIG3-202ENST00000378526 ATXN2LQ8WWM7 1075 aaKnown RBP9□□□□□ -0.97
LIG3-202ENST00000378526 CLIC6Q96NY7 704 aa9□□□□□ -0.97
LIG3-202ENST00000378526 NGRNQ9NPE2 291 aaKnown RBP9□□□□□ -0.97
LIG3-202ENST00000378526 FPGT-TNNI3KV9GXZ4 949 aa9□□□□□ -0.97
LIG3-202ENST00000378526 FAM170AA1A519 330 aa9□□□□□ -0.97
LIG3-202ENST00000378526 C5orf51A6NDU8 294 aa9□□□□□ -0.97
LIG3-202ENST00000378526 RPS6KA4O75676 772 aa9□□□□□ -0.97
LIG3-202ENST00000378526 CNPP09543 421 aaKnown RBP9□□□□□ -0.97
LIG3-202ENST00000378526 ITGALP20701 1170 aa9□□□□□ -0.97
LIG3-202ENST00000378526 NOS3P29474 1203 aa9□□□□□ -0.97
LIG3-202ENST00000378526 PKN1Q16512 942 aa9□□□□□ -0.97
LIG3-202ENST00000378526 DHFR2Q86XF0 187 aa9□□□□□ -0.97
LIG3-202ENST00000378526 CAMKK1Q8N5S9 505 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms