RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 CLPTM1O96005 669 aa16.51■□□□□ 0.23
CKAP4-201ENST00000378026 ACO1P21399 889 aaKnown RBP16.51■□□□□ 0.23
CKAP4-201ENST00000378026 GTF2H1P32780 548 aa16.51■□□□□ 0.23
CKAP4-201ENST00000378026 MEX3CQ5U5Q3 659 aaKnown RBP16.51■□□□□ 0.23
CKAP4-201ENST00000378026 NPNTQ6UXI9 565 aa16.51■□□□□ 0.23
CKAP4-201ENST00000378026 POLNQ7Z5Q5 900 aa16.51■□□□□ 0.23
CKAP4-201ENST00000378026 NCAPG2Q86XI2 1143 aa16.51■□□□□ 0.23
CKAP4-201ENST00000378026 ZNF606Q8WXB4 792 aa16.51■□□□□ 0.23
CKAP4-201ENST00000378026 C7orf26Q96N11 449 aa16.51■□□□□ 0.23
CKAP4-201ENST00000378026 RIT2Q99578 217 aa16.51■□□□□ 0.23
CKAP4-201ENST00000378026 DBNDD1Q9H9R9 158 aa16.51■□□□□ 0.23
CKAP4-201ENST00000378026 INPP5FQ9Y2H2 1132 aa16.51■□□□□ 0.23
CKAP4-201ENST00000378026 WNK3Q9BYP7 1800 aa16.51■□□□□ 0.23
CKAP4-201ENST00000378026 VILLO15195 856 aa16.5■□□□□ 0.23
CKAP4-201ENST00000378026 PMLP29590 882 aa16.5■□□□□ 0.23
CKAP4-201ENST00000378026 EIF3EP60228 445 aaKnown RBP16.5■□□□□ 0.23
CKAP4-201ENST00000378026 SP4Q02446 784 aa16.5■□□□□ 0.23
CKAP4-201ENST00000378026 GK3PQ14409 553 aa16.5■□□□□ 0.23
CKAP4-201ENST00000378026 ANKRD20A4Q4UJ75 823 aa16.5■□□□□ 0.23
CKAP4-201ENST00000378026 TTC39BQ5VTQ0 682 aaPredicted RBP16.5■□□□□ 0.23
CKAP4-201ENST00000378026 DPY19L2Q6NUT2 758 aa16.5■□□□□ 0.23
CKAP4-201ENST00000378026 C16orf46Q6P387 395 aa16.5■□□□□ 0.23
CKAP4-201ENST00000378026 KLHDC10Q6PID8 442 aa16.5■□□□□ 0.23
CKAP4-201ENST00000378026 DEFB107AQ8IZN7 70 aa16.5■□□□□ 0.23
CKAP4-201ENST00000378026 NDUFAF2Q8N183 169 aa16.5■□□□□ 0.23
CKAP4-201ENST00000378026 CNBD2Q96M20 576 aa16.5■□□□□ 0.23
CKAP4-201ENST00000378026 HOMER2Q9NSB8 354 aa16.5■□□□□ 0.23
CKAP4-201ENST00000378026 ASTN2O75129 1339 aaPredicted RBP16.5■□□□□ 0.23
CKAP4-201ENST00000378026 SMIM31A0A1B0GVY4 71 aa16.5■□□□□ 0.23
CKAP4-201ENST00000378026 E7ESA3 106 aa16.5■□□□□ 0.23
CKAP4-201ENST00000378026 SERPINA6P08185 405 aa16.5■□□□□ 0.23
CKAP4-201ENST00000378026 RBP3P10745 1247 aa16.5■□□□□ 0.23
CKAP4-201ENST00000378026 IMPDH2P12268 514 aa16.5■□□□□ 0.23
CKAP4-201ENST00000378026 NCF2P19878 526 aaPredicted RBP16.5■□□□□ 0.23
CKAP4-201ENST00000378026 C1QBPQ07021 282 aaKnown RBP16.5■□□□□ 0.23
CKAP4-201ENST00000378026 STX3Q13277 289 aa16.5■□□□□ 0.23
CKAP4-201ENST00000378026 DPYSL3Q14195 570 aa16.5■□□□□ 0.23
CKAP4-201ENST00000378026 TLR1Q15399 786 aa16.5■□□□□ 0.23
CKAP4-201ENST00000378026 NADK2Q4G0N4 442 aa16.5■□□□□ 0.23
CKAP4-201ENST00000378026 FAM91A1Q658Y4 838 aa16.5■□□□□ 0.23
CKAP4-201ENST00000378026 UGT2A3Q6UWM9 527 aa16.5■□□□□ 0.23
CKAP4-201ENST00000378026 SLC26A11Q86WA9 606 aa16.5■□□□□ 0.23
CKAP4-201ENST00000378026 HSPH1Q92598 858 aa16.5■□□□□ 0.23
CKAP4-201ENST00000378026 PLEKHG4BQ96PX9 1271 aa16.5■□□□□ 0.23
CKAP4-201ENST00000378026 CALN1Q9BXU9 219 aa16.5■□□□□ 0.23
CKAP4-201ENST00000378026 NFASCO94856 1347 aa16.5■□□□□ 0.23
CKAP4-201ENST00000378026 DHX15O43143 795 aaKnown RBP16.49■□□□□ 0.23
CKAP4-201ENST00000378026 ITM2AO43736 263 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 PSMA2P25787 234 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 IL1R2P27930 398 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 ATXN3P54252 364 aaPredicted RBP16.49■□□□□ 0.23
CKAP4-201ENST00000378026 NLRP11P59045 1033 aaKnown RBP16.49■□□□□ 0.23
CKAP4-201ENST00000378026 TAF5Q15542 800 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 KYAT3Q6YP21 454 aaKnown RBP16.49■□□□□ 0.23
CKAP4-201ENST00000378026 COA1Q9GZY4 146 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 SLC9A2Q9UBY0 812 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 LZTS1Q9Y250 596 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 DNAJC16Q9Y2G8 782 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 ADAMTSL1Q8N6G6 1762 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 A0A0B4J269 797 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 TRPA1O75762 1119 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 KRT37O76014 449 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 VNN1O95497 513 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 SNRPAP09012 282 aaKnown RBP16.49■□□□□ 0.23
CKAP4-201ENST00000378026 MMP8P22894 467 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 RGS2P41220 211 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 HPCAP84074 193 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 VWA5B1Q5TIE3 1220 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 AAGABQ6PD74 315 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 EMC1Q8N766 993 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 PRPF31Q8WWY3 499 aaKnown RBP16.49■□□□□ 0.23
CKAP4-201ENST00000378026 FAF2Q96CS3 445 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 COL20A1Q9P218 1284 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 MRPL11Q9Y3B7 192 aaKnown RBP16.49■□□□□ 0.23
CKAP4-201ENST00000378026 NUB1Q9Y5A7 615 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 XIRP1Q702N8 1843 aaKnown RBP16.49■□□□□ 0.23
CKAP4-201ENST00000378026 COL24A1Q17RW2 1714 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 TFAP2AP05549 437 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 MYCLP12524 364 aaPredicted RBP16.49■□□□□ 0.23
CKAP4-201ENST00000378026 DESP17661 470 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 MSX2P35548 267 aaPredicted RBP16.49■□□□□ 0.23
CKAP4-201ENST00000378026 COPAP53621 1224 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 COG7P83436 770 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 B3GNT6Q6ZMB0 384 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 FAM196AQ6ZSG2 479 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 TMC7Q7Z402 723 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 METTL25Q8N6Q8 603 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 IFT122Q9HBG6 1241 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 USP29Q9HBJ7 922 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 XAB2Q9HCS7 855 aaKnown RBP16.49■□□□□ 0.23
CKAP4-201ENST00000378026 ZDHHC7Q9NXF8 308 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 TJP2Q9UDY2 1190 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 DTNAQ9Y4J8 743 aa16.49■□□□□ 0.23
CKAP4-201ENST00000378026 A0A0J9YVX5 310 aa16.48■□□□□ 0.23
CKAP4-201ENST00000378026 KLF11O14901 512 aa16.48■□□□□ 0.23
CKAP4-201ENST00000378026 BBOX1O75936 387 aa16.48■□□□□ 0.23
CKAP4-201ENST00000378026 HNRNPCP07910 306 aaKnown RBP eCLIP16.48■□□□□ 0.23
CKAP4-201ENST00000378026 SMIM18P0DKX4 95 aa16.48■□□□□ 0.23
CKAP4-201ENST00000378026 RPL10AP62906 217 aaKnown RBP16.48■□□□□ 0.23
CKAP4-201ENST00000378026 TMEM62Q0P6H9 643 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms