RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 GPAT2Q6NUI2 795 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 CDC73Q6P1J9 531 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 SEPT12Q8IYM1 358 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 L3MBTL3Q96JM7 780 aaPredicted RBP12.88□□□□□ -0.35
VPS13A-204ENST00000376634 DYRK1BQ9Y463 629 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 PCDHB2Q9Y5E7 798 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 ERBB3P21860 1342 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 LINC00854A0A1B0GVQ3 168 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 H7C4K7 107 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 TRAF2Q12933 501 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 XKR3Q5GH77 459 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 H7C0S8 307 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 UCHL3P15374 230 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 ZNF618Q5T7W0 954 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 SEL1L3Q68CR1 1132 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 SLC25A24Q6NUK1 477 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 KCTD17Q8N5Z5 321 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 MTA3Q9BTC8 594 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 TRIM9Q9C026 710 aa12.88□□□□□ -0.35
VPS13A-204ENST00000376634 OR1G1P47890 313 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 DENND5BQ6ZUT9 1274 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 OSCP1Q8WVF1 389 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 RAD21L1Q9H4I0 556 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 AAR2Q9Y312 384 aaKnown RBP12.87□□□□□ -0.35
VPS13A-204ENST00000376634 RPS6KL1Q9Y6S9 549 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 KANSL1LA0AUZ9 987 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.87□□□□□ -0.35
VPS13A-204ENST00000376634 F5H5T6 163 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 TEX33O43247 280 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 TAB1Q15750 504 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 FAM182BQ5T319 152 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 COQ6Q9Y2Z9 468 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 TIMM44O43615 452 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 ZCWPW2Q504Y3 356 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 TFDP3Q5H9I0 405 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 ATP6V0D2Q8N8Y2 350 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 METTL5Q9NRN9 209 aaKnown RBP12.87□□□□□ -0.35
VPS13A-204ENST00000376634 FAM220BPB1ANY3 271 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 KRT34O76011 436 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 ASS1P00966 412 aaKnown RBP12.87□□□□□ -0.35
VPS13A-204ENST00000376634 PIK3R1P27986 724 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 CNPY3Q9BT09 278 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 NLNQ9BYT8 704 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 NAB2Q15742 525 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 DGKKQ5KSL6 1271 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 PMF1Q6P1K2 205 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 MARCH10Q8NA82 808 aaPredicted RBP12.87□□□□□ -0.35
VPS13A-204ENST00000376634 QKIQ96PU8 341 aaKnown RBP eCLIP12.87□□□□□ -0.35
VPS13A-204ENST00000376634 PNKPQ96T60 521 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 NIF3L1Q9GZT8 377 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 ITIH6Q6UXX5 1313 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 FAM25AB3EWG3 89 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 FAM25CB3EWG5 89 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 FAM25GB3EWG6 89 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 ZNF862O60290 1169 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 PBLDP30039 288 aaPredicted RBP12.87□□□□□ -0.35
VPS13A-204ENST00000376634 EIF2B2P49770 351 aaKnown RBP12.87□□□□□ -0.35
VPS13A-204ENST00000376634 EPHX4Q8IUS5 362 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 ABCA6Q8N139 1617 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 POU1F1P28069 291 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 ALX1Q15699 326 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 ATP6AP1LQ52LC2 224 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 DENND1BQ6P3S1 775 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 BARGINQ6ZT62 677 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 RASGRP2Q7LDG7 609 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 SUGP1Q8IWZ8 645 aaKnown RBP12.87□□□□□ -0.35
VPS13A-204ENST00000376634 C9orf72Q96LT7 481 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 C7orf25Q9BPX7 421 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 REXO4Q9GZR2 422 aaKnown RBP12.87□□□□□ -0.35
VPS13A-204ENST00000376634 EPC1Q9H2F5 836 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 PIGUQ9H490 435 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 CYP39A1Q9NYL5 469 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 SIK3Q9Y2K2 1263 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 UNC13BO14795 1591 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 SDR42E2A6NKP2 422 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 TTLL13PA6NNM8 815 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 TM9SF1O15321 606 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 CNOT3O75175 753 aaKnown RBP12.87□□□□□ -0.35
VPS13A-204ENST00000376634 GALCP54803 685 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 TSC22D1Q15714 1073 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 PDCD10Q9BUL8 212 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 MYLK2Q9H1R3 596 aa12.87□□□□□ -0.35
VPS13A-204ENST00000376634 IL12RB1P42701 662 aa12.86□□□□□ -0.35
VPS13A-204ENST00000376634 HNMTP50135 292 aa12.86□□□□□ -0.35
VPS13A-204ENST00000376634 BNIPLQ7Z465 357 aa12.86□□□□□ -0.35
VPS13A-204ENST00000376634 JAMLQ86YT9 394 aa12.86□□□□□ -0.35
VPS13A-204ENST00000376634 WDCPQ9H6R7 721 aa12.86□□□□□ -0.35
VPS13A-204ENST00000376634 RBM12Q9NTZ6 932 aaKnown RBP12.86□□□□□ -0.35
VPS13A-204ENST00000376634 NARFQ9UHQ1 456 aa12.86□□□□□ -0.35
VPS13A-204ENST00000376634 SARSP49591 514 aaKnown RBP12.86□□□□□ -0.35
VPS13A-204ENST00000376634 NDUFAF6Q330K2 333 aa12.86□□□□□ -0.35
VPS13A-204ENST00000376634 KRT73Q86Y46 540 aa12.86□□□□□ -0.35
VPS13A-204ENST00000376634 IZUMO1Q8IYV9 350 aa12.86□□□□□ -0.35
VPS13A-204ENST00000376634 SENP2Q9HC62 589 aa12.86□□□□□ -0.35
VPS13A-204ENST00000376634 FAM117BQ6P1L5 589 aa12.86□□□□□ -0.35
VPS13A-204ENST00000376634 S100A9P06702 114 aaKnown RBP12.86□□□□□ -0.35
VPS13A-204ENST00000376634 ATAD3BQ5T9A4 648 aa12.86□□□□□ -0.35
VPS13A-204ENST00000376634 C6orf62Q9GZU0 229 aaPredicted RBP12.86□□□□□ -0.35
VPS13A-204ENST00000376634 FER1L4A9Z1Z3 1794 aa12.86□□□□□ -0.35
VPS13A-204ENST00000376634 TRIM43BA6NCK2 446 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms