RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 ANTXR2P58335 489 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 MTFMTQ96DP5 389 aaKnown RBP14.16□□□□□ -0.14
COL4A1-201ENST00000375820 CATSPER2Q96P56 530 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 SEPHS2Q99611 448 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 NOD2Q9HC29 1040 aa14.16□□□□□ -0.14
COL4A1-201ENST00000375820 RRM2P31350 389 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 CSTF3Q12996 717 aaKnown RBP14.15□□□□□ -0.14
COL4A1-201ENST00000375820 GPR141Q7Z602 305 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 NMD3Q96D46 503 aaKnown RBP14.15□□□□□ -0.14
COL4A1-201ENST00000375820 PARVBQ9HBI1 364 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 VPS28Q9UK41 221 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 NRKQ7Z2Y5 1582 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 CENPCQ03188 943 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 MMRN1Q13201 1228 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 UGT3A1Q6NUS8 523 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 CCDC149Q6ZUS6 474 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 LPAR1Q92633 364 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 CNTNAP5Q8WYK1 1306 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 FAM25AB3EWG3 89 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 FAM25CB3EWG5 89 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 FAM25GB3EWG6 89 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 PLA2G6O60733 806 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 NFICP08651 508 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 IRAK1P51617 712 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 AQP5P55064 265 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 TRAPPC11Q7Z392 1133 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 TFAP2DQ7Z6R9 452 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 ANKS1AQ92625 1134 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 AGPAT3Q9NRZ7 376 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 PRMT7Q9NVM4 692 aaPredicted RBP14.15□□□□□ -0.14
COL4A1-201ENST00000375820 MGAT4DA6NG13 374 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 MSH4O15457 936 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 HBP1O60381 514 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 ANXA9O76027 345 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 PCDH8O95206 1070 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 LTFP02788 710 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 FDX1P10109 184 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 ERVK-10P10266 1014 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 PON1P27169 355 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 NCKAP1LP55160 1127 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 KCNMA1Q12791 1236 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 CYLC2Q14093 348 aaPredicted RBP14.15□□□□□ -0.14
COL4A1-201ENST00000375820 TPD52L3Q96J77 140 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 DEFB129Q9H1M3 183 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 MTIF3Q9H2K0 278 aaKnown RBP14.15□□□□□ -0.14
COL4A1-201ENST00000375820 CCNT2O60583 730 aaKnown RBP14.15□□□□□ -0.14
COL4A1-201ENST00000375820 RPL10AP62906 217 aaKnown RBP14.15□□□□□ -0.14
COL4A1-201ENST00000375820 NECAB2Q7Z6G3 386 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 SLC47A2Q86VL8 602 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 EDEM1Q92611 657 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 NUDT12Q9BQG2 462 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 RNF19AQ9NV58 838 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 MCM8Q9UJA3 840 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 PLEKHG2Q9H7P9 1386 aa14.15□□□□□ -0.14
COL4A1-201ENST00000375820 PDS5AQ29RF7 1337 aaKnown RBP14.15□□□□□ -0.14
COL4A1-201ENST00000375820 C19orf81C9J6K1 198 aa14.15□□□□□ -0.15
COL4A1-201ENST00000375820 VHLP40337 213 aa14.15□□□□□ -0.15
COL4A1-201ENST00000375820 ATP6AP1LQ52LC2 224 aa14.15□□□□□ -0.15
COL4A1-201ENST00000375820 SLC13A5Q86YT5 568 aaPredicted RBP14.15□□□□□ -0.15
COL4A1-201ENST00000375820 ADGRF2Q8IZF7 708 aa14.15□□□□□ -0.15
COL4A1-201ENST00000375820 UTP15Q8TED0 518 aaKnown RBP14.15□□□□□ -0.15
COL4A1-201ENST00000375820 RSPH9Q9H1X1 276 aaPredicted RBP14.15□□□□□ -0.15
COL4A1-201ENST00000375820 TTC37Q6PGP7 1564 aa14.14□□□□□ -0.15
COL4A1-201ENST00000375820 SLC12A8A0AV02 714 aa14.14□□□□□ -0.15
COL4A1-201ENST00000375820 PIPSLA2A3N6 862 aa14.14□□□□□ -0.15
COL4A1-201ENST00000375820 PPP1R3GB7ZBB8 358 aa14.14□□□□□ -0.15
COL4A1-201ENST00000375820 GCLCP48506 637 aaPredicted RBP14.14□□□□□ -0.15
COL4A1-201ENST00000375820 LINC00523Q86TU6 105 aa14.14□□□□□ -0.15
COL4A1-201ENST00000375820 TDRD5Q8NAT2 981 aaKnown RBP14.14□□□□□ -0.15
COL4A1-201ENST00000375820 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.14□□□□□ -0.158e-7■■■■■ 60.1
COL4A1-201ENST00000375820 FIG4Q92562 907 aa14.14□□□□□ -0.15
COL4A1-201ENST00000375820 YWHAZP63104 245 aaKnown RBP14.14□□□□□ -0.15
COL4A1-201ENST00000375820 MTDHQ86UE4 582 aaKnown RBP14.14□□□□□ -0.15
COL4A1-201ENST00000375820 MYO1HQ8N1T3 1032 aa14.14□□□□□ -0.15
COL4A1-201ENST00000375820 GJD4Q96KN9 370 aaPredicted RBP14.14□□□□□ -0.15
COL4A1-201ENST00000375820 SH3GL1Q99961 368 aa14.14□□□□□ -0.15
COL4A1-201ENST00000375820 PPIEQ9UNP9 301 aaKnown RBP14.14□□□□□ -0.15
COL4A1-201ENST00000375820 USP20Q9Y2K6 914 aa14.14□□□□□ -0.15
COL4A1-201ENST00000375820 MYL4P12829 197 aa14.14□□□□□ -0.15
COL4A1-201ENST00000375820 GEMP55040 296 aa14.14□□□□□ -0.15
COL4A1-201ENST00000375820 OXCT1P55809 520 aa14.14□□□□□ -0.15
COL4A1-201ENST00000375820 NLRP9Q7RTR0 991 aa14.14□□□□□ -0.15
COL4A1-201ENST00000375820 RDM1Q8NG50 284 aa14.14□□□□□ -0.15
COL4A1-201ENST00000375820 KLHL25Q9H0H3 589 aa14.14□□□□□ -0.15
COL4A1-201ENST00000375820 HDHD2Q9H0R4 259 aa14.14□□□□□ -0.15
COL4A1-201ENST00000375820 MED24O75448 989 aa14.14□□□□□ -0.15
COL4A1-201ENST00000375820 MKL2Q9ULH7 1088 aa14.14□□□□□ -0.15
COL4A1-201ENST00000375820 ATP6V1C1P21283 382 aa14.14□□□□□ -0.15
COL4A1-201ENST00000375820 CDC42EP1Q00587 391 aa14.14□□□□□ -0.15
COL4A1-201ENST00000375820 POU6F1Q14863 301 aa14.14□□□□□ -0.15
COL4A1-201ENST00000375820 OASLQ15646 514 aaKnown RBP14.14□□□□□ -0.15
COL4A1-201ENST00000375820 TTLL9Q3SXZ7 439 aa14.14□□□□□ -0.15
COL4A1-201ENST00000375820 TCHHL1Q5QJ38 904 aaPredicted RBP14.14□□□□□ -0.15
COL4A1-201ENST00000375820 MRNIPQ6NTE8 343 aa14.14□□□□□ -0.15
COL4A1-201ENST00000375820 CES3Q6UWW8 571 aa14.14□□□□□ -0.15
COL4A1-201ENST00000375820 SLFN11Q7Z7L1 901 aa14.14□□□□□ -0.15
COL4A1-201ENST00000375820 ATG16L2Q8NAA4 619 aa14.14□□□□□ -0.15
COL4A1-201ENST00000375820 TMEM169Q96HH4 297 aa14.14□□□□□ -0.15
COL4A1-201ENST00000375820 PGLYRP2Q96PD5 576 aa14.14□□□□□ -0.15
COL4A1-201ENST00000375820 TMEM120AQ9BXJ8 343 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms