RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 STMN4Q9H169 189 aaPredicted RBP13.81□□□□□ -0.2
SQSTM1-201ENST00000360718 C5orf60A6NFR6 353 aa13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 TMEM110-MUSTN1A8MSY1 372 aa13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 GABRDO14764 452 aa13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 KIAA0355O15063 1070 aa13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 PFKMP08237 780 aa13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 CTNNA2P26232 953 aa13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 RFC2P35250 354 aa13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 SNX16P57768 344 aa13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 PSMC1P62191 440 aaKnown RBP13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 GOLGA7BQ2TAP0 167 aa13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 C6orf118Q5T5N4 469 aa13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 TMCO2Q7Z6W1 182 aaPredicted RBP13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 CPLX4Q7Z7G2 160 aa13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 CACNA2D3Q8IZS8 1091 aa13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 UBA3Q8TBC4 463 aa13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 RAPGEF5Q92565 580 aa13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 C18orf8Q96DM3 657 aa13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 TRIM7Q9C029 511 aa13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 ANAPC7Q9UJX3 599 aa13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 DSEQ9UL01 958 aa13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 SNX24Q9Y343 169 aa13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 GOLGA6L7A0A1B0GV03 622 aa13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 GJB6O95452 261 aa13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 CCDC130P13994 396 aa13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 TAP1Q03518 808 aa13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 ACTN3Q08043 901 aaPredicted RBP13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 SLMAPQ14BN4 828 aa13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 PTPN20Q4JDL3 420 aa13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 GKAP1Q5VSY0 366 aaPredicted RBP13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 ARHGAP17Q68EM7 881 aa13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 PLEKHA7Q6IQ23 1121 aa13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 DNAJC24Q6P3W2 148 aa13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 CPNE8Q86YQ8 564 aa13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 SPATA18Q8TC71 538 aa13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 RSPH1Q8WYR4 309 aa13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 BTBD6Q96KE9 485 aa13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 PLVAPQ9BX97 442 aa13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 DDX43Q9NXZ2 648 aaKnown RBP13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 WDR35Q9P2L0 1181 aa13.8□□□□□ -0.2
SQSTM1-201ENST00000360718 SETSIPP0DME0 302 aa13.79□□□□□ -0.2
SQSTM1-201ENST00000360718 PTGIRP43119 386 aa13.79□□□□□ -0.2
SQSTM1-201ENST00000360718 GPD2P43304 727 aa13.79□□□□□ -0.2
SQSTM1-201ENST00000360718 ADCY2Q08462 1091 aa13.79□□□□□ -0.2
SQSTM1-201ENST00000360718 MAMLD1Q13495 774 aa13.79□□□□□ -0.2
SQSTM1-201ENST00000360718 IKBKEQ14164 716 aa13.79□□□□□ -0.2
SQSTM1-201ENST00000360718 FBXW10Q5XX13 1052 aa13.79□□□□□ -0.2
SQSTM1-201ENST00000360718 CNKSR3Q6P9H4 555 aa13.79□□□□□ -0.2
SQSTM1-201ENST00000360718 TTC30AQ86WT1 665 aa13.79□□□□□ -0.2
SQSTM1-201ENST00000360718 B3GALNT2Q8NCR0 500 aa13.79□□□□□ -0.2
SQSTM1-201ENST00000360718 SEC16BQ96JE7 1060 aa13.79□□□□□ -0.2
SQSTM1-201ENST00000360718 RTP3Q9BQQ7 232 aa13.79□□□□□ -0.2
SQSTM1-201ENST00000360718 NRDE2Q9H7Z3 1164 aa13.79□□□□□ -0.2
SQSTM1-201ENST00000360718 PRG3Q9Y2Y8 225 aaPredicted RBP13.79□□□□□ -0.2
SQSTM1-201ENST00000360718 VWA8A3KMH1 1905 aa13.79□□□□□ -0.2
SQSTM1-201ENST00000360718 PTPRSQ13332 1948 aa13.79□□□□□ -0.2
SQSTM1-201ENST00000360718 SPOPO43791 374 aa13.79□□□□□ -0.2
SQSTM1-201ENST00000360718 UPP2O95045 317 aa13.79□□□□□ -0.2
SQSTM1-201ENST00000360718 ACRP10323 421 aa13.79□□□□□ -0.2
SQSTM1-201ENST00000360718 COMTP21964 271 aa13.79□□□□□ -0.2
SQSTM1-201ENST00000360718 PCSK1P29120 753 aa13.79□□□□□ -0.2
SQSTM1-201ENST00000360718 TKTP29401 623 aaKnown RBP13.79□□□□□ -0.2
SQSTM1-201ENST00000360718 PEX5P50542 639 aa13.79□□□□□ -0.2
SQSTM1-201ENST00000360718 SLC8A3P57103 927 aa13.79□□□□□ -0.2
SQSTM1-201ENST00000360718 PKDCCQ504Y2 493 aa13.79□□□□□ -0.2
SQSTM1-201ENST00000360718 CYP4A22Q5TCH4 519 aa13.79□□□□□ -0.2
SQSTM1-201ENST00000360718 DCUN1D2Q6PH85 259 aa13.79□□□□□ -0.2
SQSTM1-201ENST00000360718 CCDC137Q6PK04 289 aaKnown RBP13.79□□□□□ -0.2
SQSTM1-201ENST00000360718 NPAS4Q8IUM7 802 aa13.79□□□□□ -0.2
SQSTM1-201ENST00000360718 PRELID2Q8N945 189 aa13.79□□□□□ -0.2
SQSTM1-201ENST00000360718 FEZF2Q8TBJ5 459 aa13.79□□□□□ -0.2
SQSTM1-201ENST00000360718 CPXM1Q96SM3 734 aa13.79□□□□□ -0.2
SQSTM1-201ENST00000360718 M0QZQ0 153 aa13.78□□□□□ -0.2
SQSTM1-201ENST00000360718 RGS16O15492 202 aaPredicted RBP13.78□□□□□ -0.2
SQSTM1-201ENST00000360718 AGTP01019 485 aa13.78□□□□□ -0.2
SQSTM1-201ENST00000360718 RAG1P15918 1043 aa13.78□□□□□ -0.2
SQSTM1-201ENST00000360718 PTPN1P18031 435 aaKnown RBP13.78□□□□□ -0.2
SQSTM1-201ENST00000360718 PBX3P40426 434 aa13.78□□□□□ -0.2
SQSTM1-201ENST00000360718 OR1G1P47890 313 aa13.78□□□□□ -0.2
SQSTM1-201ENST00000360718 BCAT1P54687 386 aa13.78□□□□□ -0.2
SQSTM1-201ENST00000360718 ERMARDQ5T6L9 678 aa13.78□□□□□ -0.2
SQSTM1-201ENST00000360718 ZDHHC24Q6UX98 284 aa13.78□□□□□ -0.2
SQSTM1-201ENST00000360718 TAX1BP1Q86VP1 789 aa13.78□□□□□ -0.2
SQSTM1-201ENST00000360718 FBXO25Q8TCJ0 367 aa13.78□□□□□ -0.2
SQSTM1-201ENST00000360718 CHMP6Q96FZ7 201 aa13.78□□□□□ -0.2
SQSTM1-201ENST00000360718 XPO6Q96QU8 1125 aaKnown RBP13.78□□□□□ -0.2
SQSTM1-201ENST00000360718 TMEM109Q9BVC6 243 aa13.78□□□□□ -0.2
SQSTM1-201ENST00000360718 MRPL9Q9BYD2 267 aaKnown RBP13.78□□□□□ -0.2
SQSTM1-201ENST00000360718 CRTAC1Q9NQ79 661 aa13.78□□□□□ -0.2
SQSTM1-201ENST00000360718 TCRBV5S1A1TA0A578 114 aa13.78□□□□□ -0.2
SQSTM1-201ENST00000360718 ADORA2BP29275 332 aa13.78□□□□□ -0.2
SQSTM1-201ENST00000360718 MNAT1P51948 309 aa13.78□□□□□ -0.2
SQSTM1-201ENST00000360718 DEFB103AP81534 67 aa13.78□□□□□ -0.2
SQSTM1-201ENST00000360718 BST2Q10589 180 aaKnown RBP13.78□□□□□ -0.2
SQSTM1-201ENST00000360718 ZNF268Q14587 947 aaPredicted RBP13.78□□□□□ -0.2
SQSTM1-201ENST00000360718 CYP1B1Q16678 543 aa13.78□□□□□ -0.2
SQSTM1-201ENST00000360718 SWT1Q5T5J6 900 aaKnown RBP13.78□□□□□ -0.2
SQSTM1-201ENST00000360718 MFSD5Q6N075 450 aa13.78□□□□□ -0.2
SQSTM1-201ENST00000360718 CCDC105Q8IYK2 499 aa13.78□□□□□ -0.2
SQSTM1-201ENST00000360718 ANKRD52Q8NB46 1076 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms