RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 CYP3A43Q9HB55 503 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 KCNH7Q9NS40 1196 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 RBM12Q9NTZ6 932 aaKnown RBP6.68□□□□□ -1.34
UPF2-201ENST00000356352 DDIT4Q9NX09 232 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 GGA3Q9NZ52 723 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 SYNCRIPO60506 623 aaKnown RBP6.68□□□□□ -1.34
UPF2-201ENST00000356352 GRAP2O75791 330 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 TALDO1P37837 337 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 PTPAQ15257 358 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 GNASQ5JWF2 1037 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 BARGINQ6ZT62 677 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 OTOAQ7RTW8 1153 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 ATG9AQ7Z3C6 839 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 SLFN11Q7Z7L1 901 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 ARRDC4Q8NCT1 418 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 WDR24Q96S15 920 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 SLC24A3Q9HC58 644 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 EVA1BQ9NVM1 165 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 IFRD1O00458 451 aaPredicted RBP6.68□□□□□ -1.34
UPF2-201ENST00000356352 NBNO60934 754 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 ACADMP11310 421 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 GRK2P25098 689 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 TKTP29401 623 aaKnown RBP6.68□□□□□ -1.34
UPF2-201ENST00000356352 MAGEA10P43363 369 aaPredicted RBP6.68□□□□□ -1.34
UPF2-201ENST00000356352 CCT8P50990 548 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 SHROOM1Q2M3G4 852 aaPredicted RBP6.68□□□□□ -1.34
UPF2-201ENST00000356352 MROH9Q5TGP6 573 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 ZNF280DQ6N043 979 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 BNC2Q6ZN30 1099 aaPredicted RBP6.68□□□□□ -1.34
UPF2-201ENST00000356352 SKA1Q96BD8 255 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 IL17RAQ96F46 866 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 CGRRF1Q99675 332 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 GINS4Q9BRT9 223 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 OSBPL6Q9BZF3 934 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 ZCCHC2Q9C0B9 1178 aaKnown RBP6.68□□□□□ -1.34
UPF2-201ENST00000356352 PHACTR1Q9C0D0 580 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 RAD21L1Q9H4I0 556 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 JMJD4Q9H9V9 463 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 IL1RL2Q9HB29 575 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 POLG2Q9UHN1 485 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 VPS51Q9UID3 782 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 RUVBL2Q9Y230 463 aaKnown RBP6.68□□□□□ -1.34
UPF2-201ENST00000356352 PPP2R3BQ9Y5P8 575 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 PHF20L1A8MW92 1017 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 H3BMM5 538 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 O00370 1275 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 CNOT3O75175 753 aaKnown RBP6.67□□□□□ -1.34
UPF2-201ENST00000356352 DDHD2O94830 711 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 SUPT7LO94864 414 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 RPN2P04844 631 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 RHOCP08134 193 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 TCN1P20061 433 aaPredicted RBP6.67□□□□□ -1.34
UPF2-201ENST00000356352 CYP2A7P20853 494 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 LSP1P33241 339 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 TMED10P49755 219 aaKnown RBP6.67□□□□□ -1.34
UPF2-201ENST00000356352 SKP1P63208 163 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 TMEM62Q0P6H9 643 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 VPS72Q15906 364 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 TFDP3Q5H9I0 405 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 CCDC81Q6ZN84 652 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 MTSS1LQ765P7 747 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 ZNF34Q8IZ26 560 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 ADGRF2Q8IZF7 708 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 CARNMT1Q8N4J0 409 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 C1orf131Q8NDD1 294 aaKnown RBP6.67□□□□□ -1.34
UPF2-201ENST00000356352 DDHD1Q8NEL9 900 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 ANKS1AQ92625 1134 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 SIKE1Q9BRV8 207 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 GEMIN8Q9NWZ8 242 aaKnown RBP6.67□□□□□ -1.34
UPF2-201ENST00000356352 KANSL3Q9P2N6 904 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.67□□□□□ -1.34
UPF2-201ENST00000356352 CNTNAP5Q8WYK1 1306 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 GLI2P10070 1586 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 FAM220BPB1ANY3 271 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 TMEM114B3SHH9 223 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 PSMD12O00232 456 aaPredicted RBP6.67□□□□□ -1.34
UPF2-201ENST00000356352 TRIM24O15164 1050 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 VPS4BO75351 444 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 GLP2RO95838 553 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 ATP5BP06576 529 aaKnown RBP6.67□□□□□ -1.34
UPF2-201ENST00000356352 RASA1P20936 1047 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 THPOP40225 353 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 MMRN1Q13201 1228 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 PPIL2Q13356 520 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 ATP6AP1LQ52LC2 224 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 FAM45BPQ6NSW5 357 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 DENND5BQ6ZUT9 1274 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 SRLQ86TD4 932 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 WDR49Q8IV35 697 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 CCDC103Q8IW40 242 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 PHACTR4Q8IZ21 702 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 ZNF557Q8N988 423 aaPredicted RBP6.67□□□□□ -1.34
UPF2-201ENST00000356352 PPP1R14AQ96A00 147 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 MTERF3Q96E29 417 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 PDLIM2Q96JY6 352 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 CCDC3Q9BQI4 270 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 KCTD10Q9H3F6 313 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 THG1LQ9NWX6 298 aaKnown RBP6.67□□□□□ -1.34
UPF2-201ENST00000356352 RPS6KL1Q9Y6S9 549 aa6.67□□□□□ -1.34
UPF2-201ENST00000356352 ZCCHC11Q5TAX3 1644 aaKnown RBP6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms