RNA–Protein interactions for RNA: ENST00000354757.4

PCDHB11-201, Transcript of protocadherin beta 11, humanhuman

APPRIS P1 BASIC

Gene PCDHB11, Length 4,198 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB11-201ENST00000354757 MAGEA4P43358 317 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 LHX1P48742 406 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 COBLL1Q53SF7 1204 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 CCDC197Q8NCU1 140 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 ALG3Q92685 438 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 ISCUQ9H1K1 167 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 PPME1Q9Y570 386 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 ARHGAP42A6NI28 874 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 CA12O43570 354 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 SH3BP5O60239 455 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 SUN1O94901 812 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 TYK2P29597 1187 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 CAV1Q03135 178 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 PPP1R26Q5T8A7 1209 aaPredicted RBP12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 CCNYL1Q8N7R7 359 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 ARL8AQ96BM9 186 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 MUC3BQ9H195 1237 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 PDZD7Q9H5P4 517 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 RAB21Q9UL25 225 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 PCDHA2Q9Y5H9 948 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 TTLL13PA6NNM8 815 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 KRT38O76015 456 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 C22orf31O95567 290 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 HSD17B3P37058 310 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 CRYBB1P53674 252 aaPredicted RBP12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 TWF1Q12792 350 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 TBC1D1Q86TI0 1168 aaPredicted RBP12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 MDM1Q8TC05 714 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 FAM136AQ96C01 138 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 PITPNM3Q9BZ71 974 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 A0A0A6YYK5 440 aaPredicted RBP12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 TSPAN1O60635 241 aa12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 PTPN1P18031 435 aaKnown RBP12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 PPP2R2AP63151 447 aa12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 MAMLD1Q13495 774 aa12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 MAPRE1Q15691 268 aaKnown RBP12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 ARHGAP39Q9C0H5 1083 aa12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 DNPEPQ9ULA0 475 aa12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 SLC27A5Q9Y2P5 690 aa12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 PCDHGC5Q9Y5F6 944 aa12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 RPTORQ8N122 1335 aa12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 PSTPIP1O43586 416 aa12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 DUSP11O75319 330 aaKnown RBP12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 JCHAINP01591 159 aa12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 MARSP56192 900 aaKnown RBP12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 NOMO3P69849 1222 aa12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 ZNF280DQ6N043 979 aa12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 LPIN3Q9BQK8 851 aa12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 TRPV6Q9H1D0 765 aa12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 SEMA4AQ9H3S1 761 aa12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 APOBEC3GQ9HC16 384 aaKnown RBP12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 MOSPD1Q9UJG1 213 aa12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 C3orf70A6NLC5 250 aaPredicted RBP12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 PJA2O43164 708 aa12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 ZBTB24O43167 697 aaPredicted RBP12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 GPC4O75487 556 aa12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 PBX3P40426 434 aa12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 TRADDQ15628 312 aa12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 ITPRIPL1Q6GPH6 555 aa12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 NLRP14Q86W24 1093 aa12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 JOSD2Q8TAC2 188 aa12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 STMN2Q93045 179 aa12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 TTC25Q96NG3 672 aa12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 DONSONQ9NYP3 566 aa12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 MARF1Q9Y4F3 1742 aaKnown RBP12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 SPTLC1O15269 473 aa12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 MX2P20592 715 aa12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 MBTD1Q05BQ5 628 aa12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 SLC10A6Q3KNW5 377 aa12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 CPNE8Q86YQ8 564 aa12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 ACTRT1Q8TDG2 376 aa12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 EPS8L3Q8TE67 593 aaKnown RBP12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 ERLEC1Q96DZ1 483 aa12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 CCT8L2Q96SF2 557 aa12.84□□□□□ -0.35
PCDHB11-201ENST00000354757 C4BPAP04003 597 aaKnown RBP12.83□□□□□ -0.36
PCDHB11-201ENST00000354757 PRLRP16471 622 aa12.83□□□□□ -0.36
PCDHB11-201ENST00000354757 AXLP30530 894 aa12.83□□□□□ -0.36
PCDHB11-201ENST00000354757 HNRNPH3P31942 346 aaKnown RBP12.83□□□□□ -0.36
PCDHB11-201ENST00000354757 NOVP48745 357 aa12.83□□□□□ -0.36
PCDHB11-201ENST00000354757 NSUN2Q08J23 767 aaKnown RBP eCLIP12.83□□□□□ -0.36
PCDHB11-201ENST00000354757 MMRN1Q13201 1228 aa12.83□□□□□ -0.36
PCDHB11-201ENST00000354757 ASIC4Q96FT7 647 aa12.83□□□□□ -0.36
PCDHB11-201ENST00000354757 VPS39Q96JC1 886 aa12.83□□□□□ -0.36
PCDHB11-201ENST00000354757 RNF39Q9H2S5 420 aa12.83□□□□□ -0.36
PCDHB11-201ENST00000354757 ATXN3LQ9H3M9 355 aa12.83□□□□□ -0.36
PCDHB11-201ENST00000354757 DMAC2Q9NW81 257 aa12.83□□□□□ -0.36
PCDHB11-201ENST00000354757 PFDN6O15212 129 aa12.83□□□□□ -0.36
PCDHB11-201ENST00000354757 PPP1R37O75864 691 aa12.83□□□□□ -0.36
PCDHB11-201ENST00000354757 HMGCRP04035 888 aa12.83□□□□□ -0.36
PCDHB11-201ENST00000354757 URODP06132 367 aa12.83□□□□□ -0.36
PCDHB11-201ENST00000354757 ETS1P14921 441 aa12.83□□□□□ -0.36
PCDHB11-201ENST00000354757 PDK1Q15118 436 aa12.83□□□□□ -0.36
PCDHB11-201ENST00000354757 B3GALNT2Q8NCR0 500 aa12.83□□□□□ -0.36
PCDHB11-201ENST00000354757 C3orf20Q8ND61 904 aa12.83□□□□□ -0.36
PCDHB11-201ENST00000354757 EXD1Q8NHP7 514 aa12.83□□□□□ -0.36
PCDHB11-201ENST00000354757 ZNF669Q96BR6 464 aaPredicted RBP12.83□□□□□ -0.36
PCDHB11-201ENST00000354757 DDX27Q96GQ7 796 aaKnown RBP12.83□□□□□ -0.36
PCDHB11-201ENST00000354757 GABRQQ9UN88 632 aa12.83□□□□□ -0.36
PCDHB11-201ENST00000354757 STK25O00506 426 aa12.83□□□□□ -0.36
PCDHB11-201ENST00000354757 USP12O75317 370 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms