RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 ARMCX1Q9P291 453 aa8.16□□□□□ -1.1
CIITA-201ENST00000324288 TRPC4Q9UBN4 977 aa8.16□□□□□ -1.1
CIITA-201ENST00000324288 WBP11Q9Y2W2 641 aaKnown RBP8.16□□□□□ -1.1
CIITA-201ENST00000324288 SLC30A1Q9Y6M5 507 aa8.16□□□□□ -1.1
CIITA-201ENST00000324288 RASA2Q15283 850 aa8.16□□□□□ -1.1
CIITA-201ENST00000324288 LRRC74BQ6ZQY2 392 aa8.16□□□□□ -1.1
CIITA-201ENST00000324288 TRAPPC11Q7Z392 1133 aa8.16□□□□□ -1.1
CIITA-201ENST00000324288 TC2NQ8N9U0 490 aa8.16□□□□□ -1.1
CIITA-201ENST00000324288 ERP44Q9BS26 406 aa8.16□□□□□ -1.1
CIITA-201ENST00000324288 SCN2AQ99250 2005 aa8.16□□□□□ -1.1
CIITA-201ENST00000324288 SHANK2Q9UPX8 1470 aa8.16□□□□□ -1.1
CIITA-201ENST00000324288 CST8O60676 142 aa8.16□□□□□ -1.1
CIITA-201ENST00000324288 ATG7O95352 703 aa8.16□□□□□ -1.1
CIITA-201ENST00000324288 C6orf222P0C671 652 aaPredicted RBP8.16□□□□□ -1.1
CIITA-201ENST00000324288 SFNP31947 248 aa8.16□□□□□ -1.1
CIITA-201ENST00000324288 POU5F1Q01860 360 aaKnown RBP8.16□□□□□ -1.1
CIITA-201ENST00000324288 VAC14Q08AM6 782 aa8.16□□□□□ -1.1
CIITA-201ENST00000324288 CDH18Q13634 790 aa8.16□□□□□ -1.1
CIITA-201ENST00000324288 C2CD6Q53TS8 623 aa8.16□□□□□ -1.1
CIITA-201ENST00000324288 TMEM26Q6ZUK4 368 aa8.16□□□□□ -1.1
CIITA-201ENST00000324288 ROPN1BQ9BZX4 212 aaPredicted RBP8.16□□□□□ -1.1
CIITA-201ENST00000324288 ROPN1Q9HAT0 212 aaPredicted RBP8.16□□□□□ -1.1
CIITA-201ENST00000324288 TOR4AQ9NXH8 423 aa8.16□□□□□ -1.1
CIITA-201ENST00000324288 LSM7Q9UK45 103 aaKnown RBP8.16□□□□□ -1.1
CIITA-201ENST00000324288 PPIEQ9UNP9 301 aaKnown RBP8.16□□□□□ -1.1
CIITA-201ENST00000324288 PFASO15067 1338 aa8.16□□□□□ -1.1
CIITA-201ENST00000324288 FIG4Q92562 907 aa8.16□□□□□ -1.1
CIITA-201ENST00000324288 RMND5BQ96G75 393 aaPredicted RBP8.16□□□□□ -1.1
CIITA-201ENST00000324288 MAGED4Q96JG8 741 aa8.16□□□□□ -1.1
CIITA-201ENST00000324288 TAGLN3Q9UI15 199 aa8.16□□□□□ -1.1
CIITA-201ENST00000324288 F5H6K3 240 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 CPSF4O95639 269 aaKnown RBP8.15□□□□□ -1.1
CIITA-201ENST00000324288 ITGB6P18564 788 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 KLRC3Q07444 240 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 EMC2Q15006 297 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 PDK1Q15118 436 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 KCTD19Q17RG1 926 aaPredicted RBP8.15□□□□□ -1.1
CIITA-201ENST00000324288 DNAJC14Q6Y2X3 702 aaPredicted RBP8.15□□□□□ -1.1
CIITA-201ENST00000324288 WDR36Q8NI36 951 aaKnown RBP8.15□□□□□ -1.1
CIITA-201ENST00000324288 TRPC4APQ8TEL6 797 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 APEX2Q9UBZ4 518 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 KCNH4Q9UQ05 1017 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 EVPLQ92817 2033 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 GPAT2Q6NUI2 795 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 RNF112Q9ULX5 631 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 PLEKHG1Q9ULL1 1385 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 FAM58BPP0C7Q3 252 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 NCAM1P13591 858 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 NELFEP18615 380 aaKnown RBP8.15□□□□□ -1.1
CIITA-201ENST00000324288 SPRP35270 261 aaPredicted RBP8.15□□□□□ -1.1
CIITA-201ENST00000324288 ZIK1Q3SY52 487 aaPredicted RBP8.15□□□□□ -1.1
CIITA-201ENST00000324288 CCSAPQ6IQ19 270 aaPredicted RBP8.15□□□□□ -1.1
CIITA-201ENST00000324288 CACTIN-AS1Q8N1I8 211 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 TNIP3Q96KP6 325 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 REEP2Q9BRK0 252 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 ILKAPQ9H0C8 392 aaPredicted RBP8.15□□□□□ -1.1
CIITA-201ENST00000324288 KCTD10Q9H3F6 313 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 RRM2P31350 389 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 LDHDQ86WU2 507 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 LRRC6Q86X45 466 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 FUT8Q9BYC5 575 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 MBD2Q9UBB5 411 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 TMEM94Q12767 1356 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 ATP10AO60312 1499 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 CHRNA5P30532 468 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 FMO5P49326 533 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 CACUL1Q86Y37 369 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 FBXO40Q9UH90 709 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 STAU1O95793 577 aaKnown RBP8.15□□□□□ -1.1
CIITA-201ENST00000324288 THRAP10827 490 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 FGFR2P21802 821 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 TGM2P21980 687 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 HSPA13P48723 471 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 MMRN1Q13201 1228 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 CES3Q6UWW8 571 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 SETD3Q86TU7 594 aaPredicted RBP8.15□□□□□ -1.1
CIITA-201ENST00000324288 PARP8Q8N3A8 854 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 PCDHA10Q9Y5I2 948 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 ITIH6Q6UXX5 1313 aa8.15□□□□□ -1.1
CIITA-201ENST00000324288 NFICP08651 508 aa8.15□□□□□ -1.11
CIITA-201ENST00000324288 OR1G1P47890 313 aa8.15□□□□□ -1.11
CIITA-201ENST00000324288 TAP1Q03518 808 aa8.15□□□□□ -1.11
CIITA-201ENST00000324288 STK4Q13043 487 aa8.15□□□□□ -1.11
CIITA-201ENST00000324288 NECTIN1Q15223 517 aa8.15□□□□□ -1.11
CIITA-201ENST00000324288 USP39Q53GS9 565 aaKnown RBP8.15□□□□□ -1.11
CIITA-201ENST00000324288 LRRC49Q8IUZ0 686 aa8.15□□□□□ -1.11
CIITA-201ENST00000324288 SRBD1Q8N5C6 995 aaKnown RBP8.15□□□□□ -1.11
CIITA-201ENST00000324288 RNF148Q8N7C7 305 aa8.15□□□□□ -1.11
CIITA-201ENST00000324288 GUCY1B2O75343 617 aa8.15□□□□□ -1.11
CIITA-201ENST00000324288 ABCB1P08183 1280 aaPredicted RBP8.15□□□□□ -1.11
CIITA-201ENST00000324288 PRKCQQ04759 706 aa8.15□□□□□ -1.11
CIITA-201ENST00000324288 PAN2Q504Q3 1202 aaKnown RBP8.15□□□□□ -1.11
CIITA-201ENST00000324288 ARHGEF26Q96DR7 871 aa8.15□□□□□ -1.11
CIITA-201ENST00000324288 MED8Q96G25 268 aa8.15□□□□□ -1.11
CIITA-201ENST00000324288 TSEN34Q9BSV6 310 aaKnown RBP8.15□□□□□ -1.11
CIITA-201ENST00000324288 IARS2Q9NSE4 1012 aaKnown RBP8.15□□□□□ -1.11
CIITA-201ENST00000324288 KLHL3Q9UH77 587 aa8.15□□□□□ -1.11
CIITA-201ENST00000324288 SRGNP10124 158 aa8.15□□□□□ -1.11
CIITA-201ENST00000324288 CCDC130P13994 396 aa8.15□□□□□ -1.11
CIITA-201ENST00000324288 GLRA4Q5JXX5 417 aa8.15□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms