RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 TRIML2Q8N7C3 387 aa6.92□□□□□ -1.3
ZNF540-201ENST00000316433 SLC16A10Q8TF71 515 aa6.92□□□□□ -1.3
ZNF540-201ENST00000316433 HPS1Q92902 700 aa6.92□□□□□ -1.3
ZNF540-201ENST00000316433 PTCD3Q96EY7 689 aaKnown RBP6.92□□□□□ -1.3
ZNF540-201ENST00000316433 GIMAP5Q96F15 307 aa6.92□□□□□ -1.3
ZNF540-201ENST00000316433 FIZ1Q96SL8 496 aa6.92□□□□□ -1.3
ZNF540-201ENST00000316433 EYA3Q99504 573 aa6.92□□□□□ -1.3
ZNF540-201ENST00000316433 LSM14BQ9BX40 385 aaKnown RBP6.92□□□□□ -1.3
ZNF540-201ENST00000316433 CELF4Q9BZC1 486 aaKnown RBP6.92□□□□□ -1.3
ZNF540-201ENST00000316433 KLHL25Q9H0H3 589 aa6.92□□□□□ -1.3
ZNF540-201ENST00000316433 C10orf88Q9H8K7 445 aa6.92□□□□□ -1.3
ZNF540-201ENST00000316433 TBC1D14Q9P2M4 693 aa6.92□□□□□ -1.3
ZNF540-201ENST00000316433 GNPTGQ9UJJ9 305 aa6.92□□□□□ -1.3
ZNF540-201ENST00000316433 PPM1HQ9ULR3 514 aa6.92□□□□□ -1.3
ZNF540-201ENST00000316433 NEU2Q9Y3R4 380 aa6.92□□□□□ -1.3
ZNF540-201ENST00000316433 SPEF1Q9Y4P9 236 aa6.92□□□□□ -1.3
ZNF540-201ENST00000316433 SQORQ9Y6N5 450 aa6.92□□□□□ -1.3
ZNF540-201ENST00000316433 KIAA0391O15091 583 aaKnown RBP6.91□□□□□ -1.3
ZNF540-201ENST00000316433 CLOCKO15516 846 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 SIN3BO75182 1162 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 TNFAIP8O95379 198 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 TTLL1O95922 423 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 KRT6AP02538 564 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 KRT6BP04259 564 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 CD48P09326 243 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 ZNF135P52742 658 aaPredicted RBP6.91□□□□□ -1.3
ZNF540-201ENST00000316433 GJA9P57773 515 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 EVA1CP58658 441 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 KLHL30Q0D2K2 578 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 APOFQ13790 326 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 MPP2Q14168 576 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 CYP2A13Q16696 494 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 KYNUQ16719 465 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 ARSHQ5FYA8 562 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 C6orf163Q5TEZ5 329 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 TATDN1Q6P1N9 297 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 TPTE2Q6XPS3 522 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 DGLUCYQ7Z3D6 616 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 TMEM151BQ8IW70 566 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 GALNT4Q8N4A0 578 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 METTL13Q8N6R0 699 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 LMO3Q8TAP4 145 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 ZC3H15Q8WU90 426 aaKnown RBP6.91□□□□□ -1.3
ZNF540-201ENST00000316433 TMA16Q96EY4 203 aaKnown RBP6.91□□□□□ -1.3
ZNF540-201ENST00000316433 CEP95Q96GE4 821 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 FAM161BQ96MY7 647 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 BTBD9Q96Q07 612 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 TRIM51Q9BSJ1 452 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 IDI2Q9BXS1 227 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 ZNF696Q9H7X3 374 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 CAAP1Q9H8G2 361 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 JMJD4Q9H9V9 463 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 GPAMQ9HCL2 828 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 NKIRAS1Q9NYS0 192 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 GRHL1Q9NZI5 618 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 GMIPQ9P107 970 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 CFL2Q9Y281 166 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 ANGPTL3Q9Y5C1 460 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 RPTORQ8N122 1335 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 PLSCR1O15162 318 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 SLC37A4O43826 429 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 SORBS3O60504 671 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 PLA2G4BP0C869 781 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 COL6A1P12109 1028 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 BRAFP15056 766 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 VEGFAP15692 232 aaPredicted RBP6.91□□□□□ -1.3
ZNF540-201ENST00000316433 PGM1P36871 562 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 P2RX3P56373 397 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 IL9RQ01113 521 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 CENPCQ03188 943 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 GALNT1Q10472 559 aaPredicted RBP6.91□□□□□ -1.3
ZNF540-201ENST00000316433 EFTUD2Q15029 972 aaKnown RBP eCLIP6.91□□□□□ -1.3
ZNF540-201ENST00000316433 LRRC36Q1X8D7 754 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 TRMT5Q32P41 509 aaKnown RBP6.91□□□□□ -1.3
ZNF540-201ENST00000316433 CYP4A22Q5TCH4 519 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 LPCAT2Q7L5N7 544 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 DHDDSQ86SQ9 333 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 ZNF677Q86XU0 584 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 BBOF1Q8ND07 529 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 HELQQ8TDG4 1101 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 SH3RF3Q8TEJ3 882 aaPredicted RBP6.91□□□□□ -1.3
ZNF540-201ENST00000316433 FAM172AQ8WUF8 416 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 SLC5A5Q92911 643 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 TAMM41Q96BW9 452 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 ASIC4Q96FT7 647 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 KLC2Q9H0B6 622 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 CDH19Q9H159 772 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 FAM124BQ9H5Z6 455 aaPredicted RBP6.91□□□□□ -1.3
ZNF540-201ENST00000316433 IGSF9Q9P2J2 1179 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 HDAC9Q9UKV0 1011 aa6.91□□□□□ -1.3
ZNF540-201ENST00000316433 AGO2Q9UKV8 859 aaKnown RBP6.91□□□□□ -1.3
ZNF540-201ENST00000316433 PP2D1A8MPX8 630 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 FKBP6O75344 327 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 CIB2O75838 187 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 RBP3P10745 1247 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 POLR2CP19387 275 aaPredicted RBP6.9□□□□□ -1.3
ZNF540-201ENST00000316433 CXCR2P25025 360 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 SCNN1DP51172 638 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 KCNH2Q12809 1159 aa6.9□□□□□ -1.3
ZNF540-201ENST00000316433 NCOA4Q13772 614 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms