RNA–Protein interactions for RNA: ENST00000305481.10

USP47-201, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 3,577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-201ENST00000305481 GPATCH2LQ9NWQ4 482 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 NINJ2Q9NZG7 142 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 DCAF8L1A6NGE4 600 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 SGK1O00141 431 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 DNALI1O14645 258 aaPredicted RBP6.85□□□□□ -1.31
USP47-201ENST00000305481 LCP1P13796 627 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 THPOP40225 353 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 MDH1P40925 334 aaKnown RBP6.85□□□□□ -1.31
USP47-201ENST00000305481 ATXN1P54253 815 aaKnown RBP6.85□□□□□ -1.31
USP47-201ENST00000305481 BCAT1P54687 386 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 NRLP54845 237 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 CDH6P55285 790 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 GPS1Q13098 491 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 PTGISQ16647 500 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 FAM182AQ5T1J6 154 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 EP400NLQ6ZTU2 488 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 B4GALNT4Q76KP1 1039 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 MRPL10Q7Z7H8 261 aaKnown RBP6.85□□□□□ -1.31
USP47-201ENST00000305481 RSPH3Q86UC2 560 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 RFX6Q8HWS3 928 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 ZDHHC17Q8IUH5 632 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 RELL1Q8IUW5 271 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 ZCCHC9Q8N567 271 aaKnown RBP6.85□□□□□ -1.31
USP47-201ENST00000305481 CENPIQ92674 756 aaPredicted RBP6.85□□□□□ -1.31
USP47-201ENST00000305481 HNRNPABQ99729 332 aaKnown RBP6.85□□□□□ -1.31
USP47-201ENST00000305481 NGRNQ9NPE2 291 aaKnown RBP6.85□□□□□ -1.31
USP47-201ENST00000305481 PADI3Q9ULW8 664 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 TLDC2A0PJX2 215 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 SMIM23A6NLE4 172 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 APOC4-APOC2K7ER74 178 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 PRPSAP2O60256 369 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 APOC2P02655 101 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 CD52P31358 61 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 SDC4P31431 198 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 SLCO1A2P46721 670 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 AUHQ13825 339 aaKnown RBP6.84□□□□□ -1.31
USP47-201ENST00000305481 RNASEH2BQ5TBB1 312 aaKnown RBP6.84□□□□□ -1.31
USP47-201ENST00000305481 SCYL2Q6P3W7 929 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 SLC26A9Q7LBE3 791 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 PIGZQ86VD9 579 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 UNC45BQ8IWX7 931 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 PQLC3Q8N755 202 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 BBOF1Q8ND07 529 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 RABEP2Q9H5N1 569 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 RSAD1Q9HA92 442 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 PCDH9Q9HC56 1237 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 TRMT13Q9NUP7 481 aaKnown RBP6.84□□□□□ -1.31
USP47-201ENST00000305481 TPX2Q9ULW0 747 aaKnown RBP6.84□□□□□ -1.31
USP47-201ENST00000305481 ALDH1A1P00352 501 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 THP07101 528 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 GHRP10912 638 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 PTPN1P18031 435 aaKnown RBP6.84□□□□□ -1.31
USP47-201ENST00000305481 CST5P28325 142 aaPredicted RBP6.84□□□□□ -1.31
USP47-201ENST00000305481 PTPN9P43378 593 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 SCNN1GP51170 649 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 GAD2Q05329 585 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 DSC3Q14574 896 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 LPIN1Q14693 890 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 LONRF1Q17RB8 773 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 TRIM71Q2Q1W2 868 aaKnown RBP6.84□□□□□ -1.31
USP47-201ENST00000305481 LEKR1Q6ZMV7 388 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 ARCQ7LC44 396 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 HOOK3Q86VS8 718 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 CCHCR1Q8TD31 782 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 TNIP3Q96KP6 325 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 SENP8Q96LD8 212 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 RNF157Q96PX1 679 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 SNRNP25Q9BV90 132 aaKnown RBP6.84□□□□□ -1.31
USP47-201ENST00000305481 DUSP16Q9BY84 665 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 TSPYL1Q9H0U9 437 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 PCDH18Q9HCL0 1135 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 CRTAC1Q9NQ79 661 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 TMEM30AQ9NV96 361 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 FARP1Q9Y4F1 1045 aaPredicted RBP6.84□□□□□ -1.31
USP47-201ENST00000305481 TIMM13Q9Y5L4 95 aaPredicted RBP6.84□□□□□ -1.31
USP47-201ENST00000305481 THSD7BQ9C0I4 1608 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 XPO1O14980 1071 aaKnown RBP6.84□□□□□ -1.31
USP47-201ENST00000305481 GPR182O15218 404 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 IFNB1P01574 187 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 LSP1P33241 339 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 RPL22P35268 128 aaKnown RBP6.84□□□□□ -1.31
USP47-201ENST00000305481 NDUFV1P49821 464 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 RABGGTBP53611 331 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 PPP2R2AP63151 447 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 SP3Q02447 781 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 ADCY1Q08828 1119 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 FASTKD3Q14CZ7 662 aaKnown RBP6.84□□□□□ -1.31
USP47-201ENST00000305481 BOLA3Q53S33 107 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 PLD5Q8N7P1 536 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 TTC13Q8NBP0 860 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 SMC1BQ8NDV3 1235 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 PCDH19Q8TAB3 1148 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 TEKT4Q8WW24 435 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 HSFY1Q96LI6 401 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 C9orf72Q96LT7 481 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 RBM15Q96T37 977 aaKnown RBP eCLIP6.84□□□□□ -1.31
USP47-201ENST00000305481 FRMD8P1Q9BZ68 369 aaPredicted RBP6.84□□□□□ -1.31
USP47-201ENST00000305481 CYLDQ9NQC7 956 aa6.84□□□□□ -1.31
USP47-201ENST00000305481 CASP8AP2Q9UKL3 1982 aa6.84□□□□□ -1.32
USP47-201ENST00000305481 CASTOR2A6NHX0 329 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms