RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 CENPTQ96BT3 561 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 RTFDC1Q9BY42 306 aaPredicted RBP10.2□□□□□ -0.78
COL6A3-201ENST00000295550 REXO4Q9GZR2 422 aaKnown RBP10.2□□□□□ -0.78
COL6A3-201ENST00000295550 DAPK2Q9UIK4 370 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 SETD1AO15047 1707 aaKnown RBP10.2□□□□□ -0.78
COL6A3-201ENST00000295550 PDZK1Q5T2W1 519 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 ECSITQ9BQ95 431 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 NOL6Q9H6R4 1146 aaKnown RBP10.2□□□□□ -0.78
COL6A3-201ENST00000295550 FARP1Q9Y4F1 1045 aaPredicted RBP10.2□□□□□ -0.78
COL6A3-201ENST00000295550 BAZ2AQ9UIF9 1905 aaKnown RBP10.2□□□□□ -0.78
COL6A3-201ENST00000295550 NID2Q14112 1375 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 C3orf70A6NLC5 250 aaPredicted RBP10.2□□□□□ -0.78
COL6A3-201ENST00000295550 AKT1P31749 480 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 MMRN1Q13201 1228 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 SLC29A2Q14542 456 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 PKN2Q16513 984 aaKnown RBP10.2□□□□□ -0.78
COL6A3-201ENST00000295550 SPANXN2Q5MJ10 180 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 PLEKHA5Q9HAU0 1116 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 TUBGCP4Q9UGJ1 667 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 RGPD5Q99666 1765 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 BTN3A3O00478 584 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 TSPAN9O75954 239 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 PEX5P50542 639 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 GALNTL6Q49A17 601 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 ETAA1Q9NY74 926 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 BAG6P46379 1132 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 OLFML1Q6UWY5 402 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 RDM1Q8NG50 284 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 CEP44Q9C0F1 390 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 FAM192AQ9GZU8 254 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 TRIM43BA6NCK2 446 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 TNPO2O14787 897 aaKnown RBP10.2□□□□□ -0.78
COL6A3-201ENST00000295550 MED24O75448 989 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 NDUFS3O75489 264 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 PGK2P07205 417 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 RRM2P31350 389 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 PTENP60484 403 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 SH3TC2Q8TF17 1288 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 KRT35Q92764 455 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 MIEF2Q96C03 454 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 ARHGEF26Q96DR7 871 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 FRMD8P1Q9BZ68 369 aaPredicted RBP10.2□□□□□ -0.78
COL6A3-201ENST00000295550 BCS1LQ9Y276 419 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 ZNF142P52746 1687 aaPredicted RBP10.2□□□□□ -0.78
COL6A3-201ENST00000295550 FCGR1AP12314 374 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 ITGAXP20702 1163 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 BMP6P22004 513 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 PAX7P23759 505 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 TWF2Q6IBS0 349 aaKnown RBP10.2□□□□□ -0.78
COL6A3-201ENST00000295550 LAYNQ6UX15 382 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 CENPLQ8N0S6 344 aaPredicted RBP10.2□□□□□ -0.78
COL6A3-201ENST00000295550 SIK2Q9H0K1 926 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 IL17RBQ9NRM6 502 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 ATXN2Q99700 1313 aaKnown RBP10.19□□□□□ -0.78
COL6A3-201ENST00000295550 PLIN5Q00G26 463 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 MKRN4PQ13434 485 aaPredicted RBP10.19□□□□□ -0.78
COL6A3-201ENST00000295550 C3orf62Q6ZUJ4 267 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 ZNF571Q7Z3V5 609 aaPredicted RBP10.19□□□□□ -0.78
COL6A3-201ENST00000295550 KRT78Q8N1N4 520 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 APOL5Q9BWW9 433 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 TBX20Q9UMR3 447 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 APOA4P06727 396 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 FOSL2P15408 326 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 MAGEA4P43358 317 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.19□□□□□ -0.78
COL6A3-201ENST00000295550 RBBP8NLQ8NC74 664 aaPredicted RBP10.19□□□□□ -0.78
COL6A3-201ENST00000295550 EPS8L3Q8TE67 593 aaKnown RBP10.19□□□□□ -0.78
COL6A3-201ENST00000295550 RIC8BQ9NVN3 520 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 CCT3P49368 545 aaKnown RBP10.19□□□□□ -0.78
COL6A3-201ENST00000295550 NCOA4Q13772 614 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 ZNF772Q68DY9 489 aaPredicted RBP10.19□□□□□ -0.78
COL6A3-201ENST00000295550 BNC2Q6ZN30 1099 aaPredicted RBP10.19□□□□□ -0.78
COL6A3-201ENST00000295550 SPATA18Q8TC71 538 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 MXRA8Q9BRK3 442 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 C5P01031 1676 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 SAC3D1A6NKF1 404 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 RPS6KA5O75582 802 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 EFL1Q7Z2Z2 1120 aaKnown RBP10.19□□□□□ -0.78
COL6A3-201ENST00000295550 CREG2Q8IUH2 290 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 SUGP1Q8IWZ8 645 aaKnown RBP10.19□□□□□ -0.78
COL6A3-201ENST00000295550 MIER2Q8N344 545 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 MDM1Q8TC05 714 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 TMEM79Q9BSE2 394 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 C17orf75Q9HAS0 396 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 TPST1O60507 370 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 SNRPAP09012 282 aaKnown RBP10.19□□□□□ -0.78
COL6A3-201ENST00000295550 RFC5P40937 340 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 GEMIN4P57678 1058 aaKnown RBP10.19□□□□□ -0.78
COL6A3-201ENST00000295550 USP10Q14694 798 aaKnown RBP10.19□□□□□ -0.78
COL6A3-201ENST00000295550 EIF1ADQ8N9N8 165 aaKnown RBP10.19□□□□□ -0.78
COL6A3-201ENST00000295550 MAP3K13O43283 966 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 NPM3O75607 178 aaKnown RBP10.19□□□□□ -0.78
COL6A3-201ENST00000295550 PUDPQ08623 228 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 PPP1R2P1Q96PQ5 205 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 SHCBP1LQ9BZQ2 653 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 RAB6BQ9NRW1 208 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 DMGDHQ9UI17 866 aaKnown RBP10.19□□□□□ -0.78
COL6A3-201ENST00000295550 ASXL3Q9C0F0 2248 aa10.19□□□□□ -0.78
COL6A3-201ENST00000295550 ZC3H11AO75152 810 aaKnown RBP eCLIP10.19□□□□□ -0.78
COL6A3-201ENST00000295550 ALFQ53S48 1182 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms