RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 MIPEPQ99797 713 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 BTBD10Q9BSF8 475 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 THTPAQ9BU02 230 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 DCLRE1BQ9H816 532 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 HMGXB4Q9UGU5 601 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 CYTH4Q9UIA0 394 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 ZNF214Q9UL59 606 aaPredicted RBP13.18□□□□□ -0.3
LIG1-201ENST00000263274 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.18□□□□□ -0.3
LIG1-201ENST00000263274 UGT1A9O60656 530 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 ERBB2P04626 1255 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 BCAR1P56945 870 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 RTP1P59025 263 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 TAP1Q03518 808 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 RASA2Q15283 850 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 ZRSR2Q15696 482 aaKnown RBP13.18□□□□□ -0.3
LIG1-201ENST00000263274 LRRC38Q5VT99 294 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 RINLQ6ZS11 566 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 NAT8LQ8N9F0 302 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 SMC1BQ8NDV3 1235 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 CLPTM1LQ96KA5 538 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 SRPK1Q96SB4 655 aaKnown RBP13.18□□□□□ -0.3
LIG1-201ENST00000263274 NMUR2Q9GZQ4 415 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 UGT1A7Q9HAW7 530 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 UGT1A10Q9HAW8 530 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 UGT1A8Q9HAW9 530 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 DPPA5A6NC42 116 aa13.17□□□□□ -0.3
LIG1-201ENST00000263274 MAGEB2O15479 319 aa13.17□□□□□ -0.3
LIG1-201ENST00000263274 KRT37O76014 449 aa13.17□□□□□ -0.3
LIG1-201ENST00000263274 UBA1P22314 1058 aaKnown RBP13.17□□□□□ -0.3
LIG1-201ENST00000263274 EIF4BP23588 611 aaKnown RBP13.17□□□□□ -0.3
LIG1-201ENST00000263274 ARL2P36404 184 aa13.17□□□□□ -0.3
LIG1-201ENST00000263274 LAMTOR4Q0VGL1 99 aa13.17□□□□□ -0.3
LIG1-201ENST00000263274 FAM160B1Q5W0V3 765 aa13.17□□□□□ -0.3
LIG1-201ENST00000263274 XRRA1Q6P2D8 792 aa13.17□□□□□ -0.3
LIG1-201ENST00000263274 BBS12Q6ZW61 710 aa13.17□□□□□ -0.3
LIG1-201ENST00000263274 ARFGAP1Q8N6T3 406 aa13.17□□□□□ -0.3
LIG1-201ENST00000263274 BANPQ8N9N5 519 aa13.17□□□□□ -0.3
LIG1-201ENST00000263274 RXFP2Q8WXD0 754 aa13.17□□□□□ -0.3
LIG1-201ENST00000263274 ZCWPW1Q9H0M4 648 aa13.17□□□□□ -0.3
LIG1-201ENST00000263274 SIGLEC16A6NMB1 481 aa13.17□□□□□ -0.3
LIG1-201ENST00000263274 GSC2O15499 205 aa13.17□□□□□ -0.3
LIG1-201ENST00000263274 LSM8O95777 96 aaKnown RBP13.17□□□□□ -0.3
LIG1-201ENST00000263274 TOP3BO95985 862 aaKnown RBP13.17□□□□□ -0.3
LIG1-201ENST00000263274 RBL1P28749 1068 aa13.17□□□□□ -0.3
LIG1-201ENST00000263274 C6orf163Q5TEZ5 329 aa13.17□□□□□ -0.3
LIG1-201ENST00000263274 DCAF15Q66K64 600 aa13.17□□□□□ -0.3
LIG1-201ENST00000263274 C4orf50Q6ZRC1 276 aa13.17□□□□□ -0.3
LIG1-201ENST00000263274 NDUFAF2Q8N183 169 aa13.17□□□□□ -0.3
LIG1-201ENST00000263274 DCAKDQ8WVC6 231 aa13.17□□□□□ -0.3
LIG1-201ENST00000263274 TWNKQ96RR1 684 aa13.17□□□□□ -0.3
LIG1-201ENST00000263274 SPON1Q9HCB6 807 aa13.17□□□□□ -0.3
LIG1-201ENST00000263274 ASNSD1Q9NWL6 643 aa13.17□□□□□ -0.3
LIG1-201ENST00000263274 KLC1Q07866 573 aa13.17□□□□□ -0.3
LIG1-201ENST00000263274 ZC3H12AQ5D1E8 599 aaKnown RBP13.17□□□□□ -0.3
LIG1-201ENST00000263274 ATF7IP2Q5U623 682 aa13.17□□□□□ -0.3
LIG1-201ENST00000263274 DRICH1Q6PGQ1 229 aaPredicted RBP13.17□□□□□ -0.3
LIG1-201ENST00000263274 SLC30A9Q6PML9 568 aa13.17□□□□□ -0.3
LIG1-201ENST00000263274 DLK2Q6UY11 383 aa13.17□□□□□ -0.3
LIG1-201ENST00000263274 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.17□□□□□ -0.3
LIG1-201ENST00000263274 WDR60Q8WVS4 1066 aa13.17□□□□□ -0.3
LIG1-201ENST00000263274 FAM49BQ9NUQ9 324 aa13.17□□□□□ -0.3
LIG1-201ENST00000263274 LTBP1Q14766 1721 aa13.16□□□□□ -0.3
LIG1-201ENST00000263274 NDC80O14777 642 aa13.16□□□□□ -0.3
LIG1-201ENST00000263274 TM9SF1O15321 606 aa13.16□□□□□ -0.3
LIG1-201ENST00000263274 UBTFL6P0CB48 400 aaPredicted RBP13.16□□□□□ -0.3
LIG1-201ENST00000263274 PTPRAP18433 802 aa13.16□□□□□ -0.3
LIG1-201ENST00000263274 POLE2P56282 527 aa13.16□□□□□ -0.3
LIG1-201ENST00000263274 ACSBG2Q5FVE4 666 aa13.16□□□□□ -0.3
LIG1-201ENST00000263274 LGSNQ5TDP6 509 aa13.16□□□□□ -0.3
LIG1-201ENST00000263274 CDHR3Q6ZTQ4 885 aa13.16□□□□□ -0.3
LIG1-201ENST00000263274 SCG3Q8WXD2 468 aaKnown RBP13.16□□□□□ -0.3
LIG1-201ENST00000263274 ALKBH8Q96BT7 664 aaKnown RBP13.16□□□□□ -0.3
LIG1-201ENST00000263274 TEPSINQ96N21 525 aa13.16□□□□□ -0.3
LIG1-201ENST00000263274 TSC22D3Q99576 134 aa13.16□□□□□ -0.3
LIG1-201ENST00000263274 APOL6Q9BWW8 343 aa13.16□□□□□ -0.3
LIG1-201ENST00000263274 VPS11Q9H270 941 aa13.16□□□□□ -0.3
LIG1-201ENST00000263274 NMRK1Q9NWW6 199 aa13.16□□□□□ -0.3
LIG1-201ENST00000263274 TAS2R1Q9NYW7 299 aa13.16□□□□□ -0.3
LIG1-201ENST00000263274 AFG3L2Q9Y4W6 797 aa13.16□□□□□ -0.3
LIG1-201ENST00000263274 CIB2O75838 187 aa13.16□□□□□ -0.3
LIG1-201ENST00000263274 MICAL2O94851 1124 aa13.16□□□□□ -0.3
LIG1-201ENST00000263274 PGK2P07205 417 aa13.16□□□□□ -0.3
LIG1-201ENST00000263274 NFICP08651 508 aa13.16□□□□□ -0.3
LIG1-201ENST00000263274 ABCD1P33897 745 aa13.16□□□□□ -0.3
LIG1-201ENST00000263274 RFC5P40937 340 aa13.16□□□□□ -0.3
LIG1-201ENST00000263274 GMPSP49915 693 aaPredicted RBP13.16□□□□□ -0.3
LIG1-201ENST00000263274 EPHB1P54762 984 aa13.16□□□□□ -0.3
LIG1-201ENST00000263274 AQP5P55064 265 aa13.16□□□□□ -0.3
LIG1-201ENST00000263274 CLDN10P78369 228 aa13.16□□□□□ -0.3
LIG1-201ENST00000263274 CDK16Q00536 496 aa13.16□□□□□ -0.3
LIG1-201ENST00000263274 PTPN11Q06124 597 aaPredicted RBP13.16□□□□□ -0.3
LIG1-201ENST00000263274 ANGEL2Q5VTE6 544 aaKnown RBP13.16□□□□□ -0.3
LIG1-201ENST00000263274 ANO7Q6IWH7 933 aa13.16□□□□□ -0.3
LIG1-201ENST00000263274 C16orf46Q6P387 395 aa13.16□□□□□ -0.3
LIG1-201ENST00000263274 C12orf29Q8N999 325 aa13.16□□□□□ -0.3
LIG1-201ENST00000263274 UCMAQ8WVF2 138 aa13.16□□□□□ -0.3
LIG1-201ENST00000263274 E2F7Q96AV8 911 aa13.16□□□□□ -0.3
LIG1-201ENST00000263274 CCDC124Q96CT7 223 aaKnown RBP13.16□□□□□ -0.3
LIG1-201ENST00000263274 ATXN7L3BQ96GX2 97 aa13.16□□□□□ -0.3
LIG1-201ENST00000263274 OXNAD1Q96HP4 312 aaPredicted RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms