RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 DMGDHQ9UI17 866 aaKnown RBP12.09□□□□□ -0.47
VPS4A-201ENST00000254950 HPCAL4Q9UM19 191 aa12.09□□□□□ -0.47
VPS4A-201ENST00000254950 PTPRJQ12913 1337 aa12.08□□□□□ -0.47
VPS4A-201ENST00000254950 GPR32O75388 356 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 VIMP08670 466 aaKnown RBP12.08□□□□□ -0.48
VPS4A-201ENST00000254950 CCNG2Q16589 344 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 PLEKHA7Q6IQ23 1121 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 FAM35AQ86V20 835 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 KATNAL2Q8IYT4 538 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 EDEM1Q92611 657 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 MYLPFQ96A32 169 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 SP110Q9HB58 689 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 TMEM161AQ9NX61 479 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 LSM7Q9UK45 103 aaKnown RBP12.08□□□□□ -0.48
VPS4A-201ENST00000254950 GOLGA6L7A0A1B0GV03 622 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 RNF40O75150 1001 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 CYP1A1P04798 512 aaPredicted RBP12.08□□□□□ -0.48
VPS4A-201ENST00000254950 CKBP12277 381 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 DNAJB2P25686 324 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 STIP1P31948 543 aaKnown RBP12.08□□□□□ -0.48
VPS4A-201ENST00000254950 NOS2P35228 1153 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 MSH2P43246 934 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 SLCO1A2P46721 670 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 ZNF143P52747 638 aaPredicted RBP12.08□□□□□ -0.48
VPS4A-201ENST00000254950 P3H1Q32P28 736 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 MFSD7Q6UXD7 560 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 CHSY1Q86X52 802 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 DDX42Q86XP3 938 aaKnown RBP eCLIP12.08□□□□□ -0.48
VPS4A-201ENST00000254950 MIB1Q86YT6 1006 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 ATP6V0D2Q8N8Y2 350 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 DUSP16Q9BY84 665 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 CYP4F11Q9HBI6 524 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 POPDC2Q9HBU9 364 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 PAK5Q9P286 719 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 ZBTB42B2RXF5 422 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 DFFAO00273 331 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 XPO1O14980 1071 aaKnown RBP12.08□□□□□ -0.48
VPS4A-201ENST00000254950 LRG1P02750 347 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 TUFMP49411 452 aaKnown RBP12.08□□□□□ -0.48
VPS4A-201ENST00000254950 ADCY2Q08462 1091 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 NNTQ13423 1086 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 WDR93Q6P2C0 686 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 ANKS3Q6ZW76 656 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 ANKRD42Q8N9B4 389 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 HES6Q96HZ4 224 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 FOXP3Q9BZS1 431 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 PTPRHQ9HD43 1115 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 RAB6BQ9NRW1 208 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 TRPM5Q9NZQ8 1165 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 IPO11Q9UI26 975 aaKnown RBP12.08□□□□□ -0.48
VPS4A-201ENST00000254950 SIX4Q9UIU6 781 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 STXBP5LQ9Y2K9 1186 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 ADGRA2Q96PE1 1338 aa12.08□□□□□ -0.48
VPS4A-201ENST00000254950 DNM1LO00429 736 aa12.07□□□□□ -0.48
VPS4A-201ENST00000254950 OTUD4Q01804 1114 aaKnown RBP12.07□□□□□ -0.48
VPS4A-201ENST00000254950 PPARDQ03181 441 aa12.07□□□□□ -0.48
VPS4A-201ENST00000254950 ERMARDQ5T6L9 678 aa12.07□□□□□ -0.48
VPS4A-201ENST00000254950 MON1BQ7L1V2 547 aa12.07□□□□□ -0.48
VPS4A-201ENST00000254950 ACTL9Q8TC94 416 aa12.07□□□□□ -0.48
VPS4A-201ENST00000254950 ANKRD7Q92527 254 aa12.07□□□□□ -0.48
VPS4A-201ENST00000254950 CPXM1Q96SM3 734 aa12.07□□□□□ -0.48
VPS4A-201ENST00000254950 MYH15Q9Y2K3 1946 aa12.07□□□□□ -0.48
VPS4A-201ENST00000254950 TMEM191CA6NGB0 347 aa12.07□□□□□ -0.48
VPS4A-201ENST00000254950 CLDN5O00501 218 aa12.07□□□□□ -0.48
VPS4A-201ENST00000254950 USP17L7P0C7H9 530 aa12.07□□□□□ -0.48
VPS4A-201ENST00000254950 PROZP22891 400 aa12.07□□□□□ -0.48
VPS4A-201ENST00000254950 YWHAQP27348 245 aa12.07□□□□□ -0.48
VPS4A-201ENST00000254950 HARS2P49590 506 aaKnown RBP12.07□□□□□ -0.48
VPS4A-201ENST00000254950 ATP1A2P50993 1020 aa12.07□□□□□ -0.48
VPS4A-201ENST00000254950 AMPD2Q01433 879 aa12.07□□□□□ -0.48
VPS4A-201ENST00000254950 C6orf118Q5T5N4 469 aa12.07□□□□□ -0.48
VPS4A-201ENST00000254950 RNF187Q5TA31 235 aaPredicted RBP12.07□□□□□ -0.48
VPS4A-201ENST00000254950 PNKPQ96T60 521 aa12.07□□□□□ -0.48
VPS4A-201ENST00000254950 SALL4Q9UJQ4 1053 aa12.07□□□□□ -0.48
VPS4A-201ENST00000254950 OR6C75A6NL08 312 aa12.07□□□□□ -0.48
VPS4A-201ENST00000254950 HAS3O00219 553 aa12.07□□□□□ -0.48
VPS4A-201ENST00000254950 PDE2AO00408 941 aaPredicted RBP12.07□□□□□ -0.48
VPS4A-201ENST00000254950 TRIM66O15016 1216 aa12.07□□□□□ -0.48
VPS4A-201ENST00000254950 RTN3O95197 1032 aaPredicted RBP12.07□□□□□ -0.48
VPS4A-201ENST00000254950 PDIA2Q13087 525 aaKnown RBP12.07□□□□□ -0.48
VPS4A-201ENST00000254950 HIF1AQ16665 826 aa12.07□□□□□ -0.48
VPS4A-201ENST00000254950 RYBPQ8N488 228 aaPredicted RBP12.07□□□□□ -0.48
VPS4A-201ENST00000254950 CFAP36Q96G28 342 aa12.07□□□□□ -0.48
VPS4A-201ENST00000254950 TLR8Q9NR97 1041 aaKnown RBP12.07□□□□□ -0.48
VPS4A-201ENST00000254950 TPX2Q9ULW0 747 aaKnown RBP12.07□□□□□ -0.48
VPS4A-201ENST00000254950 SQORQ9Y6N5 450 aa12.07□□□□□ -0.48
VPS4A-201ENST00000254950 MTSS1O43312 755 aa12.06□□□□□ -0.48
VPS4A-201ENST00000254950 LPIN1Q14693 890 aa12.06□□□□□ -0.48
VPS4A-201ENST00000254950 LLGL2Q6P1M3 1020 aa12.06□□□□□ -0.48
VPS4A-201ENST00000254950 C15orf39Q6ZRI6 1047 aa12.06□□□□□ -0.48
VPS4A-201ENST00000254950 NPAS4Q8IUM7 802 aa12.06□□□□□ -0.48
VPS4A-201ENST00000254950 ATPAF2Q8N5M1 289 aa12.06□□□□□ -0.48
VPS4A-201ENST00000254950 BFARQ9NZS9 450 aa12.06□□□□□ -0.48
VPS4A-201ENST00000254950 DPYSL4O14531 572 aa12.06□□□□□ -0.48
VPS4A-201ENST00000254950 STX2P32856 288 aa12.06□□□□□ -0.48
VPS4A-201ENST00000254950 GARSP41250 739 aaKnown RBP12.06□□□□□ -0.48
VPS4A-201ENST00000254950 GABPB1Q06547 395 aaPredicted RBP12.06□□□□□ -0.48
VPS4A-201ENST00000254950 EFEMP1Q12805 493 aa12.06□□□□□ -0.48
VPS4A-201ENST00000254950 C15orf59Q2T9L4 293 aaPredicted RBP12.06□□□□□ -0.48
VPS4A-201ENST00000254950 ANKS4BQ8N8V4 417 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms