RNA–Protein interactions for RNA: YLR005W

SSL1, Transcript of Subunit of the core form of RNA polymerase transcription factor TFIIH, yeastyeast

Gene SSL1, Length 1,386 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSL1YLR005W MVB12P42939 101 aa2.36□□□□□ -2.03
SSL1YLR005W YIL014C-AQ02598 104 aa2.36□□□□□ -2.03
SSL1YLR005W HHF1P02309 103 aaKnown RBP2.35□□□□□ -2.03
SSL1YLR005W PAU16P35994 123 aa2.35□□□□□ -2.03
SSL1YLR005W SHU1P38751 150 aa2.35□□□□□ -2.03
SSL1YLR005W EDC2P40023 145 aaPredicted RBP2.35□□□□□ -2.03
SSL1YLR005W COA3Q3E7B2 85 aa2.35□□□□□ -2.03
SSL1YLR005W ADH1P00330 348 aaKnown RBP2.34□□□□□ -2.04
SSL1YLR005W ATP15P21306 62 aa2.34□□□□□ -2.04
SSL1YLR005W VMA21P41806 77 aa2.34□□□□□ -2.04
SSL1YLR005W SPG1P50088 95 aa2.34□□□□□ -2.04
SSL1YLR005W KTI11Q3E840 82 aa2.34□□□□□ -2.04
SSL1YLR005W MBF1O14467 151 aaKnown RBP2.33□□□□□ -2.04
SSL1YLR005W HAP3P13434 144 aa2.33□□□□□ -2.04
SSL1YLR005W ATG8P38182 117 aaRIP-Chip data2.33□□□□□ -2.04not detected
SSL1YLR005W PEX17P40155 199 aa2.33□□□□□ -2.04
SSL1YLR005W KSH1Q8TGJ3 72 aa2.33□□□□□ -2.04
SSL1YLR005W RPL29P05747 59 aaPredicted RBP2.32□□□□□ -2.04
SSL1YLR005W QCR8P08525 94 aa2.32□□□□□ -2.04
SSL1YLR005W RPL27BP0C2H7 136 aaKnown RBP2.32□□□□□ -2.04
SSL1YLR005W YKL023C-AQ2V2P3 75 aa2.32□□□□□ -2.04
SSL1YLR005W SCM4P32564 187 aa2.31□□□□□ -2.04
SSL1YLR005W IGD1P43598 195 aa2.31□□□□□ -2.04
SSL1YLR005W YFR057WP43625 151 aa2.31□□□□□ -2.04
SSL1YLR005W ATP16Q12165 160 aa2.31□□□□□ -2.04
SSL1YLR005W YGR121W-AQ3E816 71 aa2.31□□□□□ -2.04
SSL1YLR005W RPL26AP05743 127 aaKnown RBP2.3□□□□□ -2.04
SSL1YLR005W GSP1P32835 219 aaKnown RBP2.3□□□□□ -2.04
SSL1YLR005W RPL26BP53221 127 aaKnown RBP2.3□□□□□ -2.04
SSL1YLR005W YNL190WP53872 204 aa2.3□□□□□ -2.04
SSL1YLR005W AIM11P87275 137 aa2.3□□□□□ -2.04
SSL1YLR005W YPL080CQ02826 108 aa2.3□□□□□ -2.04
SSL1YLR005W YML079WQ03629 201 aa2.3□□□□□ -2.04
SSL1YLR005W YMR103CQ04436 120 aa2.3□□□□□ -2.04
SSL1YLR005W ZEO1Q08245 113 aa2.3□□□□□ -2.04
SSL1YLR005W MRPL24P36525 258 aaPredicted RBP2.29□□□□□ -2.04
SSL1YLR005W DDR2P89113 61 aa2.29□□□□□ -2.04
SSL1YLR005W YIL002W-AQ3E7Z5 69 aa2.29□□□□□ -2.04
SSL1YLR005W YLL006W-AQ3E814 58 aa2.29□□□□□ -2.04
SSL1YLR005W GSP2P32836 220 aaKnown RBP2.28□□□□□ -2.04
SSL1YLR005W SPT4P32914 102 aaPredicted RBP2.28□□□□□ -2.04
SSL1YLR005W CYT2Q00873 224 aa2.28□□□□□ -2.04
SSL1YLR005W YNL042W-BQ3E7Z2 85 aa2.28□□□□□ -2.04
SSL1YLR005W HHO1P53551 258 aa2.27□□□□□ -2.05
SSL1YLR005W POP3P53833 195 aaPredicted RBP2.27□□□□□ -2.05
SSL1YLR005W YPL257WQ08974 193 aa2.27□□□□□ -2.05
SSL1YLR005W KRE1P17260 313 aa2.26□□□□□ -2.05
SSL1YLR005W COX10P21592 462 aa2.26□□□□□ -2.05
SSL1YLR005W YKR041WP36134 250 aa2.25□□□□□ -2.05
SSL1YLR005W FYV4P38783 130 aaPredicted RBP2.25□□□□□ -2.05
SSL1YLR005W YOR020W-AQ3E824 90 aa2.25□□□□□ -2.05
SSL1YLR005W MRPL11P36521 249 aaPredicted RBP2.24□□□□□ -2.05
SSL1YLR005W HPA2Q06592 156 aa2.24□□□□□ -2.05
SSL1YLR005W YPL261CQ08976 102 aa2.24□□□□□ -2.05
SSL1YLR005W YLR050CQ12155 161 aaKnown RBP2.24□□□□□ -2.05
SSL1YLR005W YAL063C-AQ3E791 96 aa2.24□□□□□ -2.05
SSL1YLR005W RPL28P02406 149 aaKnown RBP2.23□□□□□ -2.05
SSL1YLR005W ATP5P09457 212 aa2.23□□□□□ -2.05
SSL1YLR005W YER134CP40081 178 aa2.23□□□□□ -2.05
SSL1YLR005W NSE4P43124 402 aa2.23□□□□□ -2.05
SSL1YLR005W PAU17Q12370 124 aa2.23□□□□□ -2.05
SSL1YLR005W YBR230W-AQ3E762 66 aa2.23□□□□□ -2.05
SSL1YLR005W YHL018WP38744 120 aaPredicted RBP2.23□□□□□ -2.05
SSL1YLR005W GTT1P40582 234 aa2.23□□□□□ -2.05
SSL1YLR005W RPL37BP51402 88 aaKnown RBP2.23□□□□□ -2.05
SSL1YLR005W MRPS12P53732 153 aa2.23□□□□□ -2.05
SSL1YLR005W YJL127C-BQ3E828 52 aa2.23□□□□□ -2.05
SSL1YLR005W SCS22Q6Q595 175 aa2.23□□□□□ -2.05
SSL1YLR005W YLR236CA0A023PZG4 107 aa2.22□□□□□ -2.05
SSL1YLR005W UGX2P32772 223 aa2.22□□□□□ -2.05
SSL1YLR005W CNL1Q06333 122 aa2.22□□□□□ -2.05
SSL1YLR005W IGO2Q9P305 131 aa2.22□□□□□ -2.05
SSL1YLR005W YDL022C-AP0C5L6 82 aa2.21□□□□□ -2.06
SSL1YLR005W FYV5P25585 152 aa2.21□□□□□ -2.06
SSL1YLR005W YKL044WP36092 106 aa2.21□□□□□ -2.06
SSL1YLR005W BSC4P53841 131 aa2.21□□□□□ -2.06
SSL1YLR005W ICY1Q04329 127 aa2.21□□□□□ -2.06
SSL1YLR005W YOR072WQ08486 104 aa2.21□□□□□ -2.06
SSL1YLR005W YEL067CP39978 195 aa2.2□□□□□ -2.06
SSL1YLR005W ARL3Q02804 198 aa2.2□□□□□ -2.06
SSL1YLR005W IRC21Q04772 201 aa2.2□□□□□ -2.06
SSL1YLR005W YHL005CP38752 130 aa2.19□□□□□ -2.06
SSL1YLR005W YPL073CP40323 161 aa2.19□□□□□ -2.06
SSL1YLR005W YIA6P40556 373 aa2.19□□□□□ -2.06
SSL1YLR005W SFT1P43682 97 aa2.19□□□□□ -2.06
SSL1YLR005W RGM1Q00453 211 aa2.19□□□□□ -2.06
SSL1YLR005W YDL012CQ12489 107 aa2.19□□□□□ -2.06
SSL1YLR005W COX7P10174 60 aa2.18□□□□□ -2.06
SSL1YLR005W YBR027CP38220 110 aa2.18□□□□□ -2.06
SSL1YLR005W YHR007C-AQ07074 71 aa2.18□□□□□ -2.06
SSL1YLR005W YNL122CP53921 115 aaPredicted RBP2.17□□□□□ -2.06
SSL1YLR005W YHR139C-AO13536 103 aa2.16□□□□□ -2.06
SSL1YLR005W RPL36BO14455 100 aaKnown RBP2.16□□□□□ -2.06
SSL1YLR005W MRPL44P19956 98 aa2.16□□□□□ -2.06
SSL1YLR005W BET1P22804 142 aa2.16□□□□□ -2.06
SSL1YLR005W PAU23Q07987 124 aa2.16□□□□□ -2.06
SSL1YLR005W YHR130CP38834 111 aa2.15□□□□□ -2.07
SSL1YLR005W CGR1P53188 120 aa2.15□□□□□ -2.07
SSL1YLR005W YNR077CP53758 84 aa2.15□□□□□ -2.07
SSL1YLR005W YNL184CP53876 108 aa2.15□□□□□ -2.07
Retrieved 100 of 5,963 RNA–protein pairs in 28.7 ms