RNA–Protein interactions for RNA: YHL006C

SHU1, Transcript of Component of Shu complex (aka PCSS complex), yeastyeast

Gene SHU1, Length 453 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHU1YHL006C YLL006W-AQ3E814 58 aa8.34□□□□□ -1.07
SHU1YHL006C YLR415CO13578 112 aa8.33□□□□□ -1.08
SHU1YHL006C RPL28P02406 149 aaKnown RBP8.33□□□□□ -1.08
SHU1YHL006C CDC43P18898 376 aa8.33□□□□□ -1.08
SHU1YHL006C SCS22Q6Q595 175 aa8.33□□□□□ -1.08
SHU1YHL006C YLR050CQ12155 161 aaKnown RBP8.3□□□□□ -1.08
SHU1YHL006C YLR156WP0CE96 114 aa8.29□□□□□ -1.08
SHU1YHL006C YLR159WP0CE97 114 aa8.29□□□□□ -1.08
SHU1YHL006C YLR161WP0CE98 114 aa8.29□□□□□ -1.08
SHU1YHL006C YEL067CP39978 195 aa8.29□□□□□ -1.08
SHU1YHL006C YML079WQ03629 201 aa8.29□□□□□ -1.08
SHU1YHL006C CUE4Q04201 117 aaPredicted RBP8.29□□□□□ -1.08
SHU1YHL006C KNH1P50112 268 aa8.28□□□□□ -1.08
SHU1YHL006C YNL190WP53872 204 aa8.28□□□□□ -1.08
SHU1YHL006C HAP3P13434 144 aa8.27□□□□□ -1.09
SHU1YHL006C SEN15Q04675 128 aa8.27□□□□□ -1.09
SHU1YHL006C YKL023C-AQ2V2P3 75 aa8.27□□□□□ -1.09
SHU1YHL006C UBC11P52492 156 aa8.26□□□□□ -1.09
SHU1YHL006C RPL29P05747 59 aaPredicted RBP8.25□□□□□ -1.09
SHU1YHL006C MRPL33P20084 86 aa8.25□□□□□ -1.09
SHU1YHL006C SSS1P35179 80 aa8.25□□□□□ -1.09
SHU1YHL006C CNL1Q06333 122 aa8.25□□□□□ -1.09
SHU1YHL006C CPR1P14832 162 aaKnown RBP8.24□□□□□ -1.09
SHU1YHL006C YIL134C-AQ45U18 67 aa8.24□□□□□ -1.09
SHU1YHL006C SEC11P15367 167 aa8.22□□□□□ -1.09
SHU1YHL006C UBC4P15731 148 aa8.22□□□□□ -1.09
SHU1YHL006C UGX2P32772 223 aa8.22□□□□□ -1.09
SHU1YHL006C MRPL11P36521 249 aaPredicted RBP8.22□□□□□ -1.09
SHU1YHL006C YNR077CP53758 84 aa8.22□□□□□ -1.09
SHU1YHL006C HPA2Q06592 156 aa8.22□□□□□ -1.09
SHU1YHL006C YML108WQ03759 105 aa8.21□□□□□ -1.1
SHU1YHL006C YOR268CQ08734 132 aa8.21□□□□□ -1.1
SHU1YHL006C YNL162W-AQ3E7A8 72 aa8.21□□□□□ -1.1
SHU1YHL006C MRPL44P19956 98 aa8.2□□□□□ -1.1
SHU1YHL006C YKL044WP36092 106 aa8.2□□□□□ -1.1
SHU1YHL006C TIM11P81449 96 aaPredicted RBP8.2□□□□□ -1.1
SHU1YHL006C IGO2Q9P305 131 aa8.2□□□□□ -1.1
SHU1YHL006C SCM4P32564 187 aa8.19□□□□□ -1.1
SHU1YHL006C EDC2P40023 145 aaPredicted RBP8.19□□□□□ -1.1
SHU1YHL006C YPL073CP40323 161 aa8.19□□□□□ -1.1
SHU1YHL006C YER039C-AP0CD97 72 aa8.17□□□□□ -1.1
SHU1YHL006C ATP5P09457 212 aa8.14□□□□□ -1.11
SHU1YHL006C YFR057WP43625 151 aa8.14□□□□□ -1.11
SHU1YHL006C YGL230CP53074 147 aa8.14□□□□□ -1.11
SHU1YHL006C MID2P36027 376 aa8.13□□□□□ -1.11
SHU1YHL006C DDR2P89113 61 aa8.13□□□□□ -1.11
SHU1YHL006C YPL257WQ08974 193 aa8.13□□□□□ -1.11
SHU1YHL006C MSL1P40567 111 aaPredicted RBP8.11□□□□□ -1.11
SHU1YHL006C YNL042W-BQ3E7Z2 85 aa8.1□□□□□ -1.11
SHU1YHL006C YOR020W-AQ3E824 90 aa8.1□□□□□ -1.11
SHU1YHL006C COA6Q3E846 104 aa8.1□□□□□ -1.11
SHU1YHL006C YCR007CP25354 239 aa8.09□□□□□ -1.11
SHU1YHL006C SPG1P50088 95 aa8.09□□□□□ -1.11
SHU1YHL006C ARO2P28777 376 aaKnown RBP8.08□□□□□ -1.12
SHU1YHL006C YGR121W-AQ3E816 71 aa8.08□□□□□ -1.12
SHU1YHL006C RPL26AP05743 127 aaKnown RBP8.07□□□□□ -1.12
SHU1YHL006C YJR085CP47131 105 aaKnown RBP8.07□□□□□ -1.12
SHU1YHL006C RPL26BP53221 127 aaKnown RBP8.07□□□□□ -1.12
SHU1YHL006C KTI11Q3E840 82 aa8.07□□□□□ -1.12
SHU1YHL006C YIA6P40556 373 aa8.06□□□□□ -1.12
SHU1YHL006C IRC21Q04772 201 aa8.06□□□□□ -1.12
SHU1YHL006C YBR230W-AQ3E762 66 aa8.06□□□□□ -1.12
SHU1YHL006C SPT4P32914 102 aaPredicted RBP8.05□□□□□ -1.12
SHU1YHL006C RGM1Q00453 211 aa8.05□□□□□ -1.12
SHU1YHL006C PAU17Q12370 124 aa8.05□□□□□ -1.12
SHU1YHL006C KRE1P17260 313 aa8.04□□□□□ -1.12
SHU1YHL006C ICY1Q04329 127 aa8.04□□□□□ -1.12
SHU1YHL006C YDL157CQ12082 118 aa8.04□□□□□ -1.12
SHU1YHL006C YJL127C-BQ3E828 52 aa8.03□□□□□ -1.12
SHU1YHL006C COX10P21592 462 aa8.02□□□□□ -1.13
SHU1YHL006C BSC4P53841 131 aa7.98□□□□□ -1.13
SHU1YHL006C FYV5P25585 152 aa7.96□□□□□ -1.14
SHU1YHL006C KSH1Q8TGJ3 72 aa7.96□□□□□ -1.14
SHU1YHL006C NAT5Q08689 176 aa7.95□□□□□ -1.14
SHU1YHL006C HOT13P36078 116 aa7.94□□□□□ -1.14
SHU1YHL006C YHR007C-AQ07074 71 aa7.94□□□□□ -1.14
SHU1YHL006C ISU2Q12056 156 aa7.94□□□□□ -1.14
SHU1YHL006C YOR034C-AQ3E735 80 aa7.94□□□□□ -1.14
SHU1YHL006C CMC4Q3E7A9 73 aa7.94□□□□□ -1.14
SHU1YHL006C YMR230W-AQ3E7B5 62 aa7.94□□□□□ -1.14
SHU1YHL006C YLR236CA0A023PZG4 107 aa7.89□□□□□ -1.15
SHU1YHL006C YHR130CP38834 111 aa7.88□□□□□ -1.15
SHU1YHL006C MET32Q12041 191 aa7.88□□□□□ -1.15
SHU1YHL006C YBR027CP38220 110 aa7.87□□□□□ -1.15
SHU1YHL006C CGR1P53188 120 aa7.87□□□□□ -1.15
SHU1YHL006C YOR072WQ08486 104 aa7.87□□□□□ -1.15
SHU1YHL006C FUN14P18411 198 aa7.86□□□□□ -1.15
SHU1YHL006C MRPL24P36525 258 aaPredicted RBP7.86□□□□□ -1.15
SHU1YHL006C ELC1Q03071 99 aa7.86□□□□□ -1.15
SHU1YHL006C FYV7Q12247 151 aa7.86□□□□□ -1.15
SHU1YHL006C PAU23Q07987 124 aa7.83□□□□□ -1.16
SHU1YHL006C BET1P22804 142 aa7.81□□□□□ -1.16
SHU1YHL006C RPL36BO14455 100 aaKnown RBP7.79□□□□□ -1.16
SHU1YHL006C DUT1P33317 147 aa7.79□□□□□ -1.16
SHU1YHL006C MPC3P53311 146 aa7.78□□□□□ -1.16
SHU1YHL006C MSA2P36157 363 aa7.77□□□□□ -1.17
SHU1YHL006C YHR139C-AO13536 103 aa7.75□□□□□ -1.17
SHU1YHL006C YNL184CP53876 108 aa7.73□□□□□ -1.17
SHU1YHL006C YER181CP40097 107 aa7.72□□□□□ -1.17
SHU1YHL006C SFT1P43682 97 aa7.71□□□□□ -1.18
Retrieved 100 of 5,963 RNA–protein pairs in 76.7 ms