RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	YKR041W	P36134	250 aa		2.69	□□□□□ -1.98
UBX5	YDR330W	MSA2	P36157	363 aa		2.69	□□□□□ -1.98
UBX5	YDR330W	YEL067C	P39978	195 aa		2.69	□□□□□ -1.98
UBX5	YDR330W	YJR146W	P47174	117 aa		2.69	□□□□□ -1.98
UBX5	YDR330W	YNR077C	P53758	84 aa		2.69	□□□□□ -1.98
UBX5	YDR330W	AIM11	P87275	137 aa		2.68	□□□□□ -1.98
UBX5	YDR330W	ELC1	Q03071	99 aa		2.68	□□□□□ -1.98
UBX5	YDR330W	ATP15	P21306	62 aa		2.68	□□□□□ -1.98
UBX5	YDR330W	YNL198C	P40166	100 aa		2.68	□□□□□ -1.98
UBX5	YDR330W	YDR274C	P87283	123 aa		2.68	□□□□□ -1.98
UBX5	YDR330W	YLR296W	Q05898	108 aa		2.68	□□□□□ -1.98
UBX5	YDR330W	YKL023C-A	Q2V2P3	75 aa		2.68	□□□□□ -1.98
UBX5	YDR330W	YIL102C-A	Q2V2P5	75 aa		2.68	□□□□□ -1.98
UBX5	YDR330W	IGO2	Q9P305	131 aa		2.68	□□□□□ -1.98
UBX5	YDR330W	UBC5	P15732	148 aa		2.67	□□□□□ -1.98
UBX5	YDR330W	VTC1	P40046	129 aa	RIP-Chip data	2.67	□□□□□ -1.98	not detected
UBX5	YDR330W	YNL217W	P40152	326 aa		2.67	□□□□□ -1.98
UBX5	YDR330W	AGE2	P40529	298 aa		2.67	□□□□□ -1.98
UBX5	YDR330W	CIN5	P40917	295 aa		2.67	□□□□□ -1.98
UBX5	YDR330W	OST2	P46964	130 aa		2.67	□□□□□ -1.98
UBX5	YDR330W	MMS2	P53152	137 aa		2.67	□□□□□ -1.98
UBX5	YDR330W	YGR035W-A	Q45U48	73 aa		2.67	□□□□□ -1.98
UBX5	YDR330W	PAI3	P01094	68 aa		2.66	□□□□□ -1.98
UBX5	YDR330W	ANB1	P19211	157 aa		2.66	□□□□□ -1.98
UBX5	YDR330W	YBR209W	P38311	105 aa		2.66	□□□□□ -1.98
UBX5	YDR330W	YEL008W	P40001	126 aa		2.66	□□□□□ -1.98
UBX5	YDR330W	ARC15	P40518	154 aa	RIP-Chip data	2.66	□□□□□ -1.98	not detected
UBX5	YDR330W	YGL088W	P53151	121 aa		2.66	□□□□□ -1.98
UBX5	YDR330W	PMP3	P87284	55 aa		2.66	□□□□□ -1.98
UBX5	YDR330W	YLR194C	Q05777	254 aa		2.66	□□□□□ -1.98
UBX5	YDR330W	YHR139C-A	O13536	103 aa		2.65	□□□□□ -1.99
UBX5	YDR330W	HYP2	P23301	157 aa	Known RBP	2.65	□□□□□ -1.99
UBX5	YDR330W	YER181C	P40097	107 aa		2.65	□□□□□ -1.99
UBX5	YDR330W	MRPS12	P53732	153 aa		2.65	□□□□□ -1.99
UBX5	YDR330W	YPR195C	Q06594	109 aa		2.65	□□□□□ -1.99
UBX5	YDR330W	YOR097C	Q12274	175 aa	Predicted RBP	2.65	□□□□□ -1.99
UBX5	YDR330W	SHU1	P38751	150 aa		2.64	□□□□□ -1.99
UBX5	YDR330W	COX12	Q01519	83 aa		2.64	□□□□□ -1.99
UBX5	YDR330W	YGR240C-A	Q3E786	66 aa		2.64	□□□□□ -1.99
UBX5	YDR330W	YCR075W-A	Q3E830	75 aa		2.64	□□□□□ -1.99
UBX5	YDR330W	YCR001W	P25347	104 aa		2.63	□□□□□ -1.99
UBX5	YDR330W	UGX2	P32772	223 aa		2.63	□□□□□ -1.99
UBX5	YDR330W	POP7	P38291	140 aa		2.63	□□□□□ -1.99
UBX5	YDR330W	YOR268C	Q08734	132 aa		2.63	□□□□□ -1.99
UBX5	YDR330W	QCR8	P08525	94 aa		2.63	□□□□□ -1.99
UBX5	YDR330W	YHR125W	P38831	101 aa		2.63	□□□□□ -1.99
UBX5	YDR330W	YNL190W	P53872	204 aa		2.63	□□□□□ -1.99
UBX5	YDR330W	YMR295C	Q03559	197 aa		2.63	□□□□□ -1.99
UBX5	YDR330W	LSM6	Q06406	86 aa	Known RBP	2.63	□□□□□ -1.99
UBX5	YDR330W	VAM10	Q08474	114 aa		2.63	□□□□□ -1.99
UBX5	YDR330W	YMR122W-A	Q3E842	84 aa		2.63	□□□□□ -1.99
UBX5	YDR330W	YAR029W	P39549	74 aa		2.62	□□□□□ -1.99
UBX5	YDR330W	YDL012C	Q12489	107 aa		2.62	□□□□□ -1.99
UBX5	YDR330W	NHP2	P32495	156 aa	Predicted RBP	2.61	□□□□□ -1.99
UBX5	YDR330W	NRG2	P38082	220 aa		2.61	□□□□□ -1.99
UBX5	YDR330W	YBR219C	P38317	127 aa		2.61	□□□□□ -1.99
UBX5	YDR330W	ERI1	P62651	68 aa	Known RBP	2.61	□□□□□ -1.99
UBX5	YDR330W	NUM1	Q00402	2748 aa		2.6	□□□□□ -1.99
UBX5	YDR330W	TDA8	Q6B2U8	126 aa		2.6	□□□□□ -1.99
UBX5	YDR330W	KRE1	P17260	313 aa		2.59	□□□□□ -1.99
UBX5	YDR330W	SGF11	Q03067	99 aa		2.59	□□□□□ -1.99
UBX5	YDR330W	RUB1	Q03919	77 aa		2.59	□□□□□ -1.99
UBX5	YDR330W	RDS3	Q06835	107 aa	Predicted RBP	2.59	□□□□□ -1.99
UBX5	YDR330W	ENV10	Q99382	181 aa		2.59	□□□□□ -1.99
UBX5	YDR330W	YHR130C	P38834	111 aa		2.58	□□□□□ -2
UBX5	YDR330W	CWP2	P43497	92 aa		2.58	□□□□□ -2
UBX5	YDR330W	YAL065C	O13511	128 aa		2.58	□□□□□ -2
UBX5	YDR330W	YHR032W-A	P0C5N6	59 aa		2.58	□□□□□ -2
UBX5	YDR330W	RGM1	Q00453	211 aa		2.58	□□□□□ -2
UBX5	YDR330W	HPA2	Q06592	156 aa		2.58	□□□□□ -2
UBX5	YDR330W	RPL33A	P05744	107 aa	Known RBP	2.57	□□□□□ -2
UBX5	YDR330W	RPC10	P40422	70 aa		2.57	□□□□□ -2
UBX5	YDR330W	RPL33B	P41056	107 aa	Known RBP	2.57	□□□□□ -2
UBX5	YDR330W	YMR320W	Q04897	101 aa		2.57	□□□□□ -2
UBX5	YDR330W	YMR175W-A	Q3E766	64 aa		2.57	□□□□□ -2
UBX5	YDR330W	SLO1	Q3E784	85 aa		2.57	□□□□□ -2
UBX5	YDR330W	YDL241W	Q07738	123 aa		2.56	□□□□□ -2
UBX5	YDR330W	YLL006W-A	Q3E814	58 aa		2.56	□□□□□ -2
UBX5	YDR330W	YPR010C-A	A5Z2X5	72 aa		2.55	□□□□□ -2
UBX5	YDR330W	RPL26A	P05743	127 aa	Known RBP	2.55	□□□□□ -2
UBX5	YDR330W	YLR156W	P0CE96	114 aa		2.55	□□□□□ -2
UBX5	YDR330W	YLR159W	P0CE97	114 aa		2.55	□□□□□ -2
UBX5	YDR330W	YLR161W	P0CE98	114 aa		2.55	□□□□□ -2
UBX5	YDR330W	MRPL24	P36525	258 aa	Predicted RBP	2.55	□□□□□ -2
UBX5	YDR330W	ATX1	P38636	73 aa		2.55	□□□□□ -2
UBX5	YDR330W	HUR1	P45820	110 aa		2.55	□□□□□ -2
UBX5	YDR330W	SPC1	P46965	94 aa		2.55	□□□□□ -2
UBX5	YDR330W	YJL144W	P47009	104 aa		2.55	□□□□□ -2
UBX5	YDR330W	RPL26B	P53221	127 aa	Known RBP	2.55	□□□□□ -2
UBX5	YDR330W	DYN1	P36022	4092 aa		2.54	□□□□□ -2
UBX5	YDR330W	AUA1	P32450	94 aa		2.54	□□□□□ -2
UBX5	YDR330W	RPA12	P32529	125 aa	Known RBP	2.54	□□□□□ -2
UBX5	YDR330W	DSE2	P38844	325 aa		2.54	□□□□□ -2
UBX5	YDR330W	SVP26	P38869	228 aa		2.54	□□□□□ -2
UBX5	YDR330W	YLL066W-B	Q8TGJ7	56 aa		2.54	□□□□□ -2
UBX5	YDR330W	BET1	P22804	142 aa		2.53	□□□□□ -2
UBX5	YDR330W	YAL064W	P39711	94 aa		2.53	□□□□□ -2
UBX5	YDR330W	YNL184C	P53876	108 aa		2.53	□□□□□ -2
UBX5	YDR330W	YOR034C-A	Q3E735	80 aa		2.53	□□□□□ -2
UBX5	YDR330W	RPL29	P05747	59 aa	Predicted RBP	2.52	□□□□□ -2.01

Retrieved 100 of 5,963 RNA–protein pairs in 133.9 ms