RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W EMC5P40540 141 aa0.53□□□□□ -2.32
CDC39YCR093W YSF3P0C074 85 aaPredicted RBP0.53□□□□□ -2.32
CDC39YCR093W BRR2P32639 2163 aaKnown RBP0.53□□□□□ -2.32
CDC39YCR093W SFT1P43682 97 aa0.53□□□□□ -2.32
CDC39YCR093W YAL064WP39711 94 aa0.53□□□□□ -2.32
CDC39YCR093W YLR194CQ05777 254 aa0.53□□□□□ -2.32
CDC39YCR093W TDA2P40045 126 aa0.53□□□□□ -2.33
CDC39YCR093W HUG1Q6Q5K6 68 aa0.53□□□□□ -2.33
CDC39YCR093W YLR365WQ7LIF2 110 aa0.53□□□□□ -2.33
CDC39YCR093W TVP18Q04767 167 aa0.52□□□□□ -2.33
CDC39YCR093W YHR138CP38841 114 aaPredicted RBP0.52□□□□□ -2.33
CDC39YCR093W RPS29BP41058 56 aaKnown RBP0.52□□□□□ -2.33
CDC39YCR093W MIX14Q04341 121 aa0.52□□□□□ -2.33
CDC39YCR093W YOS1Q3E834 85 aa0.52□□□□□ -2.33
CDC39YCR093W SRX1P36077 127 aa0.52□□□□□ -2.33
CDC39YCR093W YCL001W-AP87012 153 aa0.52□□□□□ -2.33
CDC39YCR093W LCL2Q08045 131 aa0.52□□□□□ -2.33
CDC39YCR093W YER188C-AP0C0V2 99 aa0.52□□□□□ -2.33
CDC39YCR093W ACP1P32463 125 aa0.52□□□□□ -2.33
CDC39YCR093W YBR292CP38357 123 aa0.52□□□□□ -2.33
CDC39YCR093W GAT4P40569 121 aa0.52□□□□□ -2.33
CDC39YCR093W AVO2Q04749 426 aa0.52□□□□□ -2.33
CDC39YCR093W YDR524C-BQ3E6R4 66 aa0.52□□□□□ -2.33
CDC39YCR093W YKL044WP36092 106 aa0.52□□□□□ -2.33
CDC39YCR093W AIM19P40502 157 aa0.52□□□□□ -2.33
CDC39YCR093W SEN15Q04675 128 aa0.51□□□□□ -2.33
CDC39YCR093W YMR320WQ04897 101 aa0.51□□□□□ -2.33
CDC39YCR093W IMP2P46972 177 aa0.51□□□□□ -2.33
CDC39YCR093W TRS20P38334 175 aa0.51□□□□□ -2.33
CDC39YCR093W GCV3P39726 170 aaPredicted RBP0.51□□□□□ -2.33
CDC39YCR093W YMR090WQ04304 227 aaKnown RBP0.51□□□□□ -2.33
CDC39YCR093W CMC4Q3E7A9 73 aa0.51□□□□□ -2.33
CDC39YCR093W YIL046W-AQ3E7Z4 54 aa0.51□□□□□ -2.33
CDC39YCR093W YOR304C-AO14468 76 aa0.51□□□□□ -2.33
CDC39YCR093W HYM1P32464 399 aa0.51□□□□□ -2.33
CDC39YCR093W TIM8P57744 87 aa0.51□□□□□ -2.33
CDC39YCR093W COX12Q01519 83 aa0.51□□□□□ -2.33
CDC39YCR093W MIC27P50945 234 aa0.5□□□□□ -2.33
CDC39YCR093W YOR034C-AQ3E735 80 aa0.5□□□□□ -2.33
CDC39YCR093W CCW14O13547 238 aa0.5□□□□□ -2.33
CDC39YCR093W GNA1P43577 159 aaPredicted RBP0.5□□□□□ -2.33
CDC39YCR093W WIP1Q2V2P8 89 aa0.49□□□□□ -2.33
CDC39YCR093W YBR013CP38215 129 aa0.49□□□□□ -2.33
CDC39YCR093W RPS12P48589 143 aaKnown RBP0.49□□□□□ -2.33
CDC39YCR093W YDR029WQ12111 104 aa0.49□□□□□ -2.33
CDC39YCR093W HMRA2P0CY13 119 aa0.49□□□□□ -2.33
CDC39YCR093W YHL005CP38752 130 aa0.49□□□□□ -2.33
CDC39YCR093W YJR128WP47162 119 aa0.49□□□□□ -2.33
CDC39YCR093W YOL118CQ08259 102 aa0.49□□□□□ -2.33
CDC39YCR093W YLR099W-AQ3E798 87 aa0.49□□□□□ -2.33
CDC39YCR093W YEA6P39953 335 aa0.49□□□□□ -2.33
CDC39YCR093W YER187WP40102 141 aa0.49□□□□□ -2.33
CDC39YCR093W PCC1Q3E833 88 aa0.49□□□□□ -2.33
CDC39YCR093W YFR035CP43608 114 aa0.48□□□□□ -2.33
CDC39YCR093W YIL086CP40503 102 aa0.48□□□□□ -2.33
CDC39YCR093W RSM19P53733 91 aaPredicted RBP0.48□□□□□ -2.33
CDC39YCR093W ENV10Q99382 181 aa0.48□□□□□ -2.33
CDC39YCR093W PAM16P42949 149 aa0.48□□□□□ -2.33
CDC39YCR093W FYV7Q12247 151 aa0.48□□□□□ -2.33
CDC39YCR093W RUB1Q03919 77 aa0.48□□□□□ -2.33
CDC39YCR093W RPL38P49167 78 aaKnown RBP0.47□□□□□ -2.33
CDC39YCR093W YBR090CP38253 122 aa0.47□□□□□ -2.33
CDC39YCR093W AQY2P0CD90 149 aa0.47□□□□□ -2.33
CDC39YCR093W LSM6Q06406 86 aaKnown RBP0.47□□□□□ -2.33
CDC39YCR093W YLR307C-AQ3E825 87 aa0.47□□□□□ -2.33
CDC39YCR093W YIL163CP40448 117 aa0.47□□□□□ -2.33
CDC39YCR093W NHP10Q03435 203 aa0.47□□□□□ -2.33
CDC39YCR093W ZEO1Q08245 113 aa0.46□□□□□ -2.34
CDC39YCR093W YPL038W-AQ3E7B4 63 aa0.46□□□□□ -2.34
CDC39YCR093W SUS1Q6WNK7 96 aa0.46□□□□□ -2.34
CDC39YCR093W YLR157W-EP0CF00 54 aa0.46□□□□□ -2.34
CDC39YCR093W CYR1P08678 2026 aaKnown RBP0.46□□□□□ -2.34
CDC39YCR093W UBC5P15732 148 aa0.46□□□□□ -2.34
CDC39YCR093W YPL225WQ08971 146 aaKnown RBP0.46□□□□□ -2.34
CDC39YCR093W MHF2Q3E829 80 aa0.46□□□□□ -2.34
CDC39YCR093W SLH1P53327 1967 aaKnown RBP0.46□□□□□ -2.34
CDC39YCR093W SNU13P39990 126 aaKnown RBP0.45□□□□□ -2.34
CDC39YCR093W CYB5P40312 120 aa0.45□□□□□ -2.34
CDC39YCR093W SHU1P38751 150 aa0.45□□□□□ -2.34
CDC39YCR093W SNA2P56508 79 aa0.45□□□□□ -2.34
CDC39YCR093W COX7P10174 60 aa0.45□□□□□ -2.34
CDC39YCR093W YGR025WP53216 100 aa0.45□□□□□ -2.34
CDC39YCR093W YCR101CP25607 182 aa0.45□□□□□ -2.34
CDC39YCR093W POL2P21951 2222 aaKnown RBP0.44□□□□□ -2.34
CDC39YCR093W MPC2P38857 129 aa0.44□□□□□ -2.34
CDC39YCR093W MRPS12P53732 153 aa0.44□□□□□ -2.34
CDC39YCR093W YHR173CP38864 112 aa0.44□□□□□ -2.34
CDC39YCR093W YOL097W-AQ3E7Y9 61 aa0.44□□□□□ -2.34
CDC39YCR093W YOR032W-AQ8TGS1 66 aa0.44□□□□□ -2.34
CDC39YCR093W BLM10P43583 2143 aa0.44□□□□□ -2.34
CDC39YCR093W PAU20Q08322 120 aa0.43□□□□□ -2.34
CDC39YCR093W PAU19P0CE85 124 aa0.43□□□□□ -2.34
CDC39YCR093W PAU3P25610 124 aa0.43□□□□□ -2.34
CDC39YCR093W YAR029WP39549 74 aa0.43□□□□□ -2.34
CDC39YCR093W YLR042CQ07990 161 aa0.43□□□□□ -2.34
CDC39YCR093W UBC4P15731 148 aa0.43□□□□□ -2.34
CDC39YCR093W ROX3P25046 220 aa0.43□□□□□ -2.34
CDC39YCR093W COX23P38824 151 aa0.43□□□□□ -2.34
CDC39YCR093W YER039C-AP0CD97 72 aa0.42□□□□□ -2.34
CDC39YCR093W YIR020CP40575 100 aa0.42□□□□□ -2.34
Retrieved 100 of 5,963 RNA–protein pairs in 12.7 ms