RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 ACAA1P09110 424 aaPredicted RBP0.76□□□□□ -2.29
VPS35-212ENST00000640313 HOXC6P09630 235 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 ATF7P17544 494 aaPredicted RBP0.76□□□□□ -2.29
VPS35-212ENST00000640313 CHRM3P20309 590 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 FPR3P25089 353 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 HOXA11P31270 313 aaPredicted RBP0.76□□□□□ -2.29
VPS35-212ENST00000640313 CPA2P48052 419 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 GLIPR1P48060 266 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 MTNR1BP49286 362 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 CRIP2P52943 208 aaPredicted RBP0.76□□□□□ -2.29
VPS35-212ENST00000640313 ART1P52961 327 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 DLX5P56178 289 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 SOX8P57073 446 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 ZNF280AP59817 542 aaPredicted RBP0.76□□□□□ -2.29
VPS35-212ENST00000640313 KRTAP12-2P59991 146 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 E2F1Q01094 437 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 TLE1Q04724 770 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 PPATQ06203 517 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 RBL2Q08999 1139 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 SQSTM1Q13501 440 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 BOP1Q14137 746 aaKnown RBP0.76□□□□□ -2.29
VPS35-212ENST00000640313 RAB39AQ14964 217 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 LARS2Q15031 903 aaKnown RBP0.76□□□□□ -2.29
VPS35-212ENST00000640313 SHBQ15464 509 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 FCN2Q15485 313 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 CYP1B1Q16678 543 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 IZUMO4Q1ZYL8 232 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 INO80DQ53TQ3 878 aaPredicted RBP0.76□□□□□ -2.29
VPS35-212ENST00000640313 CCDC93Q567U6 631 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 KIAA1755Q5JYT7 1200 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 TRILQ7L0X0 811 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 RNF180Q86T96 592 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 RSPH3Q86UC2 560 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 PPM1KQ8N3J5 372 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 LINC01465Q8N7H1 131 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 ZNF485Q8NCK3 441 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 CLRN3Q8NCR9 226 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 OIT3Q8WWZ8 545 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 DPF2Q92785 391 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 RSPRY1Q96DX4 576 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 MRGPRX4Q96LA9 322 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 SRPK1Q96SB4 655 aaKnown RBP0.76□□□□□ -2.29
VPS35-212ENST00000640313 PTDSS2Q9BVG9 487 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 SF3B5Q9BWJ5 86 aaKnown RBP0.76□□□□□ -2.29
VPS35-212ENST00000640313 TM6SF1Q9BZW5 370 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 RBM38Q9H0Z9 239 aaKnown RBP0.76□□□□□ -2.29
VPS35-212ENST00000640313 CDT1Q9H211 546 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 BRD9Q9H8M2 597 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 KANSL2Q9H9L4 492 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 TDP1Q9NUW8 608 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 TMEM45AQ9NWC5 275 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 PLK2Q9NYY3 685 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 CFAP97Q9P2B7 532 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 SERTAD3Q9UJW9 196 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 AMFRQ9UKV5 643 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 AGAP1Q9UPQ3 857 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 DNM3Q9UQ16 869 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 A0A1B0GU03 582 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 ZNF785A8K8V0 405 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 E9PSI1 815 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 AP4M1O00189 453 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 F2RL2O00254 374 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 ATG13O75143 517 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 ZC3H11AO75152 810 aaKnown RBP eCLIP0.75□□□□□ -2.29
VPS35-212ENST00000640313 ULK1O75385 1050 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 PPP1R3DO95685 299 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 TBX6O95947 436 aaPredicted RBP0.75□□□□□ -2.29
VPS35-212ENST00000640313 IGLV2-11P01706 119 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 GJB1P08034 283 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 ATXN1LP0C7T5 689 aaKnown RBP0.75□□□□□ -2.29
VPS35-212ENST00000640313 PIM1P11309 404 aaPredicted RBP0.75□□□□□ -2.29
VPS35-212ENST00000640313 APEHP13798 732 aaKnown RBP0.75□□□□□ -2.29
VPS35-212ENST00000640313 BPIP17213 487 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 ZNF135P52742 658 aaPredicted RBP0.75□□□□□ -2.29
VPS35-212ENST00000640313 LOXL3P58215 753 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 PSMC1P62191 440 aaKnown RBP0.75□□□□□ -2.29
VPS35-212ENST00000640313 PSG6Q00889 435 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 LMAN2Q12907 356 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 COASYQ13057 564 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 E2F2Q14209 437 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 KIF22Q14807 665 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 PTGR1Q14914 329 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 ZRSR1Q15695 479 aaKnown RBP0.75□□□□□ -2.29
VPS35-212ENST00000640313 FAM110CQ1W6H9 321 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 ZNF718Q3SXZ3 478 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 ZIK1Q3SY52 487 aaPredicted RBP0.75□□□□□ -2.29
VPS35-212ENST00000640313 ZNF672Q499Z4 452 aaPredicted RBP0.75□□□□□ -2.29
VPS35-212ENST00000640313 ANO6Q4KMQ2 910 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 AWAT1Q58HT5 328 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 TOR2AQ5JU69 321 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 WASHC2DQ5SRD0 308 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 ARHGAP40Q5TG30 622 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 WBP2NLQ6ICG8 309 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 PLEKHA7Q6IQ23 1121 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 TMEM65Q6PI78 240 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 RHBDF2Q6PJF5 856 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 VSTM1Q6UX27 236 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 DSTYKQ6XUX3 929 aa0.75□□□□□ -2.29
VPS35-212ENST00000640313 MEX3BQ6ZN04 569 aaKnown RBP0.75□□□□□ -2.29
VPS35-212ENST00000640313 ZNF793Q6ZN11 406 aa0.75□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms