RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	VSTM1	Q6UX27	236 aa		12.37	□□□□□ -0.43
CLN6-223	ENST00000637823	SLC26A9	Q7LBE3	791 aa		12.37	□□□□□ -0.43
CLN6-223	ENST00000637823	GPR65	Q8IYL9	337 aa		12.37	□□□□□ -0.43
CLN6-223	ENST00000637823	JOSD2	Q8TAC2	188 aa		12.37	□□□□□ -0.43
CLN6-223	ENST00000637823	SP7	Q8TDD2	431 aa	Predicted RBP	12.37	□□□□□ -0.43
CLN6-223	ENST00000637823	RIN2	Q8WYP3	895 aa	Predicted RBP	12.37	□□□□□ -0.43
CLN6-223	ENST00000637823	KHSRP	Q92945	711 aa	Known RBP eCLIP	12.37	□□□□□ -0.43	8e-8	■□□□□ 8.3
CLN6-223	ENST00000637823	CLP1	Q92989	425 aa	Known RBP	12.37	□□□□□ -0.43
CLN6-223	ENST00000637823	CD101	Q93033	1021 aa		12.37	□□□□□ -0.43
CLN6-223	ENST00000637823	KCNK16	Q96T55	309 aa		12.37	□□□□□ -0.43
CLN6-223	ENST00000637823	MTRR	Q9UBK8	725 aa		12.37	□□□□□ -0.43
CLN6-223	ENST00000637823	RNF14	Q9UBS8	474 aa		12.37	□□□□□ -0.43
CLN6-223	ENST00000637823	TMEM59L	Q9UK28	342 aa		12.37	□□□□□ -0.43
CLN6-223	ENST00000637823	PCDHA3	Q9Y5H8	950 aa		12.37	□□□□□ -0.43
CLN6-223	ENST00000637823	GBF1	Q92538	1859 aa		12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	PLXNA4	Q9HCM2	1894 aa		12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	C2CD4B	A6NLJ0	364 aa		12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	KCNK3	O14649	394 aa		12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	DDX3Y	O15523	660 aa	Known RBP	12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	SART1	O43290	800 aa	Known RBP	12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	TLL1	O43897	1013 aa		12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	SRGAP2	O75044	1071 aa		12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	GLI1	P08151	1106 aa		12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	CPB1	P15086	417 aa		12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	PDGFRA	P16234	1089 aa		12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	CYP2F1	P24903	491 aa		12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	HOXD11	P31277	338 aa	Predicted RBP	12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	CTNNA1	P35221	906 aa	Known RBP	12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	GRIK1	P39086	918 aa		12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	GLUD2	P49448	558 aa		12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	PEX5	P50542	639 aa		12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	CDR1	P51861	262 aa		12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	ZNF143	P52747	638 aa	Predicted RBP	12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	RNASE9	P60153	205 aa	Known RBP	12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	MRPS5	P82675	430 aa	Known RBP	12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	OGDH	Q02218	1023 aa		12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	ADIG	Q0VDE8	80 aa		12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	PTPRO	Q16827	1216 aa		12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	SLC8B1	Q6J4K2	584 aa		12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	PRSS55	Q6UWB4	352 aa	Predicted RBP	12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	RSPO2	Q6UXX9	243 aa	Predicted RBP	12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	SIX6OS1	Q8N1H7	587 aa		12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	SCML4	Q8N228	414 aa		12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	CEP112	Q8N8E3	955 aa		12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	FBXO22	Q8NEZ5	403 aa		12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	SPPL2B	Q8TCT7	592 aa		12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	C8orf48	Q96LL4	319 aa		12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	NCAPG	Q9BPX3	1015 aa		12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	CNPY3	Q9BT09	278 aa		12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	RHOBTB2	Q9BYZ6	727 aa		12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	CNGB3	Q9NQW8	809 aa		12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	TMEM30A	Q9NV96	361 aa		12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	ASNSD1	Q9NWL6	643 aa		12.36	□□□□□ -0.43
CLN6-223	ENST00000637823	MKI67	P46013	3256 aa	Known RBP	12.35	□□□□□ -0.43
CLN6-223	ENST00000637823		F8VP50	259 aa		12.35	□□□□□ -0.43
CLN6-223	ENST00000637823	DPYSL4	O14531	572 aa		12.35	□□□□□ -0.43
CLN6-223	ENST00000637823	TRIM66	O15016	1216 aa		12.35	□□□□□ -0.43
CLN6-223	ENST00000637823	RNF8	O76064	485 aa		12.35	□□□□□ -0.43
CLN6-223	ENST00000637823	SLU7	O95391	586 aa	Known RBP	12.35	□□□□□ -0.43
CLN6-223	ENST00000637823	LINC00271	P0C7V0	271 aa		12.35	□□□□□ -0.43
CLN6-223	ENST00000637823	DES	P17661	470 aa		12.35	□□□□□ -0.43
CLN6-223	ENST00000637823	GPD1	P21695	349 aa		12.35	□□□□□ -0.43
CLN6-223	ENST00000637823	PSMA2	P25787	234 aa		12.35	□□□□□ -0.43
CLN6-223	ENST00000637823	CXCR5	P32302	372 aa		12.35	□□□□□ -0.43
CLN6-223	ENST00000637823	NDUFV1	P49821	464 aa		12.35	□□□□□ -0.43
CLN6-223	ENST00000637823	ARPP19	P56211	112 aa		12.35	□□□□□ -0.43
CLN6-223	ENST00000637823	CKAP4	Q07065	602 aa	Known RBP	12.35	□□□□□ -0.43
CLN6-223	ENST00000637823	ZNF252P-AS1	Q0IIN9	211 aa		12.35	□□□□□ -0.43
CLN6-223	ENST00000637823	LRRC38	Q5VT99	294 aa		12.35	□□□□□ -0.43
CLN6-223	ENST00000637823	PM20D1	Q6GTS8	502 aa		12.35	□□□□□ -0.43
CLN6-223	ENST00000637823	CC2D1A	Q6P1N0	951 aa	Predicted RBP	12.35	□□□□□ -0.43
CLN6-223	ENST00000637823	CREG2	Q8IUH2	290 aa		12.35	□□□□□ -0.43
CLN6-223	ENST00000637823	RHOT1	Q8IXI2	618 aa		12.35	□□□□□ -0.43
CLN6-223	ENST00000637823	EMC1	Q8N766	993 aa		12.35	□□□□□ -0.43
CLN6-223	ENST00000637823	MNS1	Q8NEH6	495 aa		12.35	□□□□□ -0.43
CLN6-223	ENST00000637823	CLEC4C	Q8WTT0	213 aa		12.35	□□□□□ -0.43
CLN6-223	ENST00000637823	COG1	Q8WTW3	980 aa		12.35	□□□□□ -0.43
CLN6-223	ENST00000637823	RXFP2	Q8WXD0	754 aa		12.35	□□□□□ -0.43
CLN6-223	ENST00000637823	IRGQ	Q8WZA9	623 aa		12.35	□□□□□ -0.43
CLN6-223	ENST00000637823	ABI2	Q9NYB9	513 aa	Predicted RBP	12.35	□□□□□ -0.43
CLN6-223	ENST00000637823	SSX2IP	Q9Y2D8	614 aa		12.35	□□□□□ -0.43
CLN6-223	ENST00000637823	SBDS	Q9Y3A5	250 aa	Known RBP eCLIP	12.35	□□□□□ -0.43
CLN6-223	ENST00000637823	CDY1	Q9Y6F8	540 aa		12.35	□□□□□ -0.43
CLN6-223	ENST00000637823	MYO16	Q9Y6X6	1858 aa		12.35	□□□□□ -0.43
CLN6-223	ENST00000637823	MTCL1	Q9Y4B5	1905 aa	Known RBP	12.35	□□□□□ -0.43
CLN6-223	ENST00000637823	PLXNA3	P51805	1871 aa		12.34	□□□□□ -0.43
CLN6-223	ENST00000637823	MTMR11	A4FU01	709 aa		12.34	□□□□□ -0.43
CLN6-223	ENST00000637823	TNFRSF10B	O14763	440 aa		12.34	□□□□□ -0.43
CLN6-223	ENST00000637823	ZNF185	O15231	689 aa		12.34	□□□□□ -0.43
CLN6-223	ENST00000637823	PSTPIP1	O43586	416 aa		12.34	□□□□□ -0.43
CLN6-223	ENST00000637823	HSF2BP	O75031	334 aa		12.34	□□□□□ -0.43
CLN6-223	ENST00000637823	GRAP2	O75791	330 aa		12.34	□□□□□ -0.43
CLN6-223	ENST00000637823	FGF18	O76093	207 aa		12.34	□□□□□ -0.43
CLN6-223	ENST00000637823	ZBED1	O96006	694 aa		12.34	□□□□□ -0.43
CLN6-223	ENST00000637823	UROD	P06132	367 aa		12.34	□□□□□ -0.43
CLN6-223	ENST00000637823	OR1D2	P34982	312 aa		12.34	□□□□□ -0.43
CLN6-223	ENST00000637823	BMPR1A	P36894	532 aa		12.34	□□□□□ -0.43
CLN6-223	ENST00000637823	PAFAH1B1	P43034	410 aa		12.34	□□□□□ -0.43
CLN6-223	ENST00000637823	PTPN9	P43378	593 aa		12.34	□□□□□ -0.43
CLN6-223	ENST00000637823	DNA2	P51530	1060 aa		12.34	□□□□□ -0.43

Retrieved 100 of 20,778 RNA–protein pairs in 30 ms