RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 PNKPQ96T60 521 aa20.7■□□□□ 0.9
CLN3-262ENST00000637699 TTLL2Q9BWV7 592 aa20.7■□□□□ 0.9
CLN3-262ENST00000637699 EHD2Q9NZN4 543 aa20.7■□□□□ 0.9
CLN3-262ENST00000637699 CFAP97Q9P2B7 532 aa20.7■□□□□ 0.9
CLN3-262ENST00000637699 WASF3Q9UPY6 502 aa20.7■□□□□ 0.9
CLN3-262ENST00000637699 IGF2RP11717 2491 aa20.7■□□□□ 0.9
CLN3-262ENST00000637699 FAM208BQ5VWN6 2430 aa20.69■□□□□ 0.9
CLN3-262ENST00000637699 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa20.69■□□□□ 0.9
CLN3-262ENST00000637699 FRMD3A2A2Y4 597 aa20.69■□□□□ 0.9
CLN3-262ENST00000637699 SGK1O00141 431 aa20.69■□□□□ 0.9
CLN3-262ENST00000637699 SLC9A3R1O14745 358 aaPredicted RBP20.69■□□□□ 0.9
CLN3-262ENST00000637699 TRIM66O15016 1216 aa20.69■□□□□ 0.9
CLN3-262ENST00000637699 TAF10Q12962 218 aa20.69■□□□□ 0.9
CLN3-262ENST00000637699 SURF1Q15526 300 aa20.69■□□□□ 0.9
CLN3-262ENST00000637699 FAM173BQ6P4H8 233 aa20.69■□□□□ 0.9
CLN3-262ENST00000637699 LPCAT2Q7L5N7 544 aa20.69■□□□□ 0.9
CLN3-262ENST00000637699 C12orf40Q86WS4 652 aa20.69■□□□□ 0.9
CLN3-262ENST00000637699 TMEFF1Q8IYR6 380 aa20.69■□□□□ 0.9
CLN3-262ENST00000637699 IL17RCQ8NAC3 791 aa20.69■□□□□ 0.9
CLN3-262ENST00000637699 GLIS3Q8NEA6 775 aa20.69■□□□□ 0.9
CLN3-262ENST00000637699 DEFB124Q8NES8 71 aa20.69■□□□□ 0.9
CLN3-262ENST00000637699 MRPL45Q9BRJ2 306 aaKnown RBP20.69■□□□□ 0.9
CLN3-262ENST00000637699 SNX25Q9H3E2 840 aa20.69■□□□□ 0.9
CLN3-262ENST00000637699 ZDHHC4Q9NPG8 344 aa20.69■□□□□ 0.9
CLN3-262ENST00000637699 BCCIPQ9P287 314 aaKnown RBP eCLIP20.69■□□□□ 0.9
CLN3-262ENST00000637699 GON4LQ3T8J9 2241 aa20.69■□□□□ 0.9
CLN3-262ENST00000637699 ASPMQ8IZT6 3477 aa20.69■□□□□ 0.9
CLN3-262ENST00000637699 A0A087X0B3 334 aa20.68■□□□□ 0.9
CLN3-262ENST00000637699 KIAA0391O15091 583 aaKnown RBP20.68■□□□□ 0.9
CLN3-262ENST00000637699 KAT7O95251 611 aa20.68■□□□□ 0.9
CLN3-262ENST00000637699 APODP05090 189 aa20.68■□□□□ 0.9
CLN3-262ENST00000637699 GNL1P36915 607 aaPredicted RBP20.68■□□□□ 0.9
CLN3-262ENST00000637699 P2RY2P41231 377 aa20.68■□□□□ 0.9
CLN3-262ENST00000637699 PPP3CCP48454 512 aa20.68■□□□□ 0.9
CLN3-262ENST00000637699 NOP14P78316 857 aaKnown RBP20.68■□□□□ 0.9
CLN3-262ENST00000637699 IFRD2Q12894 506 aaPredicted RBP20.68■□□□□ 0.9
CLN3-262ENST00000637699 RESTQ13127 1097 aa20.68■□□□□ 0.9
CLN3-262ENST00000637699 TRIM61Q5EBN2 209 aa20.68■□□□□ 0.9
CLN3-262ENST00000637699 TDRD10Q5VZ19 366 aaKnown RBP20.68■□□□□ 0.9
CLN3-262ENST00000637699 RHBDF2Q6PJF5 856 aa20.68■□□□□ 0.9
CLN3-262ENST00000637699 WHAMMQ8TF30 809 aa20.68■□□□□ 0.9
CLN3-262ENST00000637699 HPS3Q969F9 1004 aa20.68■□□□□ 0.9
CLN3-262ENST00000637699 SPACA7Q96KW9 195 aa20.68■□□□□ 0.9
CLN3-262ENST00000637699 FNBP1Q96RU3 617 aa20.68■□□□□ 0.9
CLN3-262ENST00000637699 ADAM33Q9BZ11 813 aa20.68■□□□□ 0.9
CLN3-262ENST00000637699 POLMQ9NP87 494 aaPredicted RBP20.68■□□□□ 0.9
CLN3-262ENST00000637699 NME7Q9Y5B8 376 aa20.68■□□□□ 0.9
CLN3-262ENST00000637699 PTPRDP23468 1912 aa20.68■□□□□ 0.9
CLN3-262ENST00000637699 MYOFQ9NZM1 2061 aa20.68■□□□□ 0.9
CLN3-262ENST00000637699 AKAP13Q12802 2813 aa20.67■□□□□ 0.9
CLN3-262ENST00000637699 OLFM2O95897 454 aa20.67■□□□□ 0.9
CLN3-262ENST00000637699 CST3P01034 146 aaPredicted RBP20.67■□□□□ 0.9
CLN3-262ENST00000637699 MBL2P11226 248 aaPredicted RBP20.67■□□□□ 0.9
CLN3-262ENST00000637699 PTGER3P43115 390 aa20.67■□□□□ 0.9
CLN3-262ENST00000637699 MAPK8P45983 427 aa20.67■□□□□ 0.9
CLN3-262ENST00000637699 CACNA2D1P54289 1103 aa20.67■□□□□ 0.9
CLN3-262ENST00000637699 KDSRQ06136 332 aa20.67■□□□□ 0.9
CLN3-262ENST00000637699 EOGTQ5NDL2 527 aa20.67■□□□□ 0.9
CLN3-262ENST00000637699 TRAPPC11Q7Z392 1133 aa20.67■□□□□ 0.9
CLN3-262ENST00000637699 WDR49Q8IV35 697 aa20.67■□□□□ 0.9
CLN3-262ENST00000637699 CCDC65Q8IXS2 484 aa20.67■□□□□ 0.9
CLN3-262ENST00000637699 PGBD3Q8N328 593 aa20.67■□□□□ 0.9
CLN3-262ENST00000637699 KDF1Q8NAX2 398 aaPredicted RBP20.67■□□□□ 0.9
CLN3-262ENST00000637699 OR6B3Q8NGW1 331 aa20.67■□□□□ 0.9
CLN3-262ENST00000637699 HMGB4Q8WW32 186 aa20.67■□□□□ 0.9
CLN3-262ENST00000637699 C8orf48Q96LL4 319 aa20.67■□□□□ 0.9
CLN3-262ENST00000637699 SLITRK1Q96PX8 696 aa20.67■□□□□ 0.9
CLN3-262ENST00000637699 SCNM1Q9BWG6 230 aa20.67■□□□□ 0.9
CLN3-262ENST00000637699 NUSAP1Q9BXS6 441 aaKnown RBP20.67■□□□□ 0.9
CLN3-262ENST00000637699 ARHGEF4Q9NR80 690 aa20.67■□□□□ 0.9
CLN3-262ENST00000637699 TMEM74BQ9NUR3 256 aa20.67■□□□□ 0.9
CLN3-262ENST00000637699 HSPBP1Q9NZL4 362 aa20.67■□□□□ 0.9
CLN3-262ENST00000637699 EVLQ9UI08 416 aaPredicted RBP20.67■□□□□ 0.9
CLN3-262ENST00000637699 ASCC3Q8N3C0 2202 aaKnown RBP20.67■□□□□ 0.9
CLN3-262ENST00000637699 SPEGQ15772 3267 aa20.66■□□□□ 0.9
CLN3-262ENST00000637699 TNFRSF10BO14763 440 aa20.66■□□□□ 0.9
CLN3-262ENST00000637699 ADH1CP00326 375 aa20.66■□□□□ 0.9
CLN3-262ENST00000637699 OAS1P00973 400 aaKnown RBP20.66■□□□□ 0.9
CLN3-262ENST00000637699 CHRM1P11229 460 aaPredicted RBP20.66■□□□□ 0.9
CLN3-262ENST00000637699 ADH5P11766 374 aa20.66■□□□□ 0.9
CLN3-262ENST00000637699 PTPN1P18031 435 aaKnown RBP20.66■□□□□ 0.9
CLN3-262ENST00000637699 LMAN2Q12907 356 aa20.66■□□□□ 0.9
CLN3-262ENST00000637699 PDILTQ8N807 584 aa20.66■□□□□ 0.9
CLN3-262ENST00000637699 KIAA1958Q8N8K9 716 aa20.66■□□□□ 0.9
CLN3-262ENST00000637699 RDH13Q8NBN7 331 aa20.66■□□□□ 0.9
CLN3-262ENST00000637699 ZNF518BQ9C0D4 1074 aa20.66■□□□□ 0.9
CLN3-262ENST00000637699 DPEP3Q9H4B8 488 aa20.66■□□□□ 0.9
CLN3-262ENST00000637699 TMEM30AQ9NV96 361 aa20.66■□□□□ 0.9
CLN3-262ENST00000637699 MBD1Q9UIS9 605 aaPredicted RBP20.66■□□□□ 0.9
CLN3-262ENST00000637699 DLATP10515 647 aaKnown RBP20.65■□□□□ 0.9
CLN3-262ENST00000637699 EIF2DP41214 584 aaKnown RBP20.65■□□□□ 0.9
CLN3-262ENST00000637699 GRIA2P42262 883 aa20.65■□□□□ 0.9
CLN3-262ENST00000637699 KIR2DL1P43626 348 aaPredicted RBP20.65■□□□□ 0.9
CLN3-262ENST00000637699 HSF5Q4G112 596 aaPredicted RBP20.65■□□□□ 0.9
CLN3-262ENST00000637699 LY6G5CQ5SRR4 150 aa20.65■□□□□ 0.9
CLN3-262ENST00000637699 KIAA1211LQ6NV74 962 aa20.65■□□□□ 0.9
CLN3-262ENST00000637699 STXBP4Q6ZWJ1 553 aa20.65■□□□□ 0.9
CLN3-262ENST00000637699 SYT12Q8IV01 421 aa20.65■□□□□ 0.9
CLN3-262ENST00000637699 TMEM121BQ9BXQ6 578 aaPredicted RBP20.65■□□□□ 0.9
CLN3-262ENST00000637699 ATXN2Q99700 1313 aaKnown RBP20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms