RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 CCDC14Q49A88 953 aa17.7■□□□□ 0.42
CLN3-252ENST00000636907 SH3PXD2AQ5TCZ1 1133 aa17.7■□□□□ 0.42
CLN3-252ENST00000636907 SLC26A9Q7LBE3 791 aa17.7■□□□□ 0.42
CLN3-252ENST00000636907 POLNQ7Z5Q5 900 aa17.7■□□□□ 0.42
CLN3-252ENST00000636907 ANKS1BQ7Z6G8 1248 aa17.7■□□□□ 0.42
CLN3-252ENST00000636907 LRRTM3Q86VH5 581 aa17.7■□□□□ 0.42
CLN3-252ENST00000636907 ZMIZ2Q8NF64 920 aa17.7■□□□□ 0.42
CLN3-252ENST00000636907 ACSF2Q96CM8 615 aaPredicted RBP17.7■□□□□ 0.42
CLN3-252ENST00000636907 SMARCD1Q96GM5 515 aa17.7■□□□□ 0.42
CLN3-252ENST00000636907 CFAP57Q96MR6 1250 aa17.7■□□□□ 0.42
CLN3-252ENST00000636907 KCNK16Q96T55 309 aa17.7■□□□□ 0.42
CLN3-252ENST00000636907 MRPL9Q9BYD2 267 aaKnown RBP17.7■□□□□ 0.42
CLN3-252ENST00000636907 MARCH5Q9NX47 278 aa17.7■□□□□ 0.42
CLN3-252ENST00000636907 PI4K2BG5E9Z4 385 aa17.69■□□□□ 0.42
CLN3-252ENST00000636907 TRAPPC3O43617 180 aa17.69■□□□□ 0.42
CLN3-252ENST00000636907 RNF8O76064 485 aa17.69■□□□□ 0.42
CLN3-252ENST00000636907 ALDH2P05091 517 aa17.69■□□□□ 0.42
CLN3-252ENST00000636907 GLI1P08151 1106 aa17.69■□□□□ 0.42
CLN3-252ENST00000636907 RARAP10276 462 aa17.69■□□□□ 0.42
CLN3-252ENST00000636907 RALAP11233 206 aa17.69■□□□□ 0.42
CLN3-252ENST00000636907 MIPP30301 263 aa17.69■□□□□ 0.42
CLN3-252ENST00000636907 SLC11A1P49279 550 aa17.69■□□□□ 0.42
CLN3-252ENST00000636907 TSPY1Q01534 308 aa17.69■□□□□ 0.42
CLN3-252ENST00000636907 HADHQ16836 314 aaKnown RBP17.69■□□□□ 0.42
CLN3-252ENST00000636907 RAB6CQ53S08 254 aa17.69■□□□□ 0.42
CLN3-252ENST00000636907 ZFYVE27Q5T4F4 411 aa17.69■□□□□ 0.42
CLN3-252ENST00000636907 NECAB2Q7Z6G3 386 aa17.69■□□□□ 0.42
CLN3-252ENST00000636907 RCOR2Q8IZ40 523 aa17.69■□□□□ 0.42
CLN3-252ENST00000636907 NDRG1Q92597 394 aaKnown RBP17.69■□□□□ 0.42
CLN3-252ENST00000636907 RNF25Q96BH1 459 aaPredicted RBP17.69■□□□□ 0.42
CLN3-252ENST00000636907 TMEM106CQ9BVX2 250 aa17.69■□□□□ 0.42
CLN3-252ENST00000636907 RAB6CQ9H0N0 254 aa17.69■□□□□ 0.42
CLN3-252ENST00000636907 SLITRK6Q9H5Y7 841 aa17.69■□□□□ 0.42
CLN3-252ENST00000636907 ZWILCHQ9H900 591 aa17.69■□□□□ 0.42
CLN3-252ENST00000636907 LRRC4Q9HBW1 653 aa17.69■□□□□ 0.42
CLN3-252ENST00000636907 DDX56Q9NY93 547 aaKnown RBP17.69■□□□□ 0.42
CLN3-252ENST00000636907 AMACRQ9UHK6 382 aa17.69■□□□□ 0.42
CLN3-252ENST00000636907 ADAM28Q9UKQ2 775 aa17.69■□□□□ 0.42
CLN3-252ENST00000636907 FNDC1Q4ZHG4 1894 aaPredicted RBP17.69■□□□□ 0.42
CLN3-252ENST00000636907 TRIM43BA6NCK2 446 aa17.68■□□□□ 0.42
CLN3-252ENST00000636907 PHF2O75151 1096 aa17.68■□□□□ 0.42
CLN3-252ENST00000636907 HEXIM1O94992 359 aaKnown RBP17.68■□□□□ 0.42
CLN3-252ENST00000636907 UPP2O95045 317 aa17.68■□□□□ 0.42
CLN3-252ENST00000636907 MCM3P25205 808 aa17.68■□□□□ 0.42
CLN3-252ENST00000636907 SDC4P31431 198 aa17.68■□□□□ 0.42
CLN3-252ENST00000636907 PCK1P35558 622 aa17.68■□□□□ 0.42
CLN3-252ENST00000636907 NDUFV1P49821 464 aa17.68■□□□□ 0.42
CLN3-252ENST00000636907 SMC1AQ14683 1233 aaKnown RBP17.68■□□□□ 0.42
CLN3-252ENST00000636907 CDO1Q16878 200 aa17.68■□□□□ 0.42
CLN3-252ENST00000636907 SMTNL2Q2TAL5 461 aa17.68■□□□□ 0.42
CLN3-252ENST00000636907 RAPGEF5Q92565 580 aa17.68■□□□□ 0.42
CLN3-252ENST00000636907 RUBCNQ92622 972 aa17.68■□□□□ 0.42
CLN3-252ENST00000636907 TRIM43Q96BQ3 446 aaPredicted RBP17.68■□□□□ 0.42
CLN3-252ENST00000636907 RBM41Q96IZ5 413 aaKnown RBP17.68■□□□□ 0.42
CLN3-252ENST00000636907 SLITRK1Q96PX8 696 aa17.68■□□□□ 0.42
CLN3-252ENST00000636907 TMEM175Q9BSA9 504 aa17.68■□□□□ 0.42
CLN3-252ENST00000636907 COLEC11Q9BWP8 271 aa17.68■□□□□ 0.42
CLN3-252ENST00000636907 HEMGNQ9BXL5 484 aa17.68■□□□□ 0.42
CLN3-252ENST00000636907 OSBPL8Q9BZF1 889 aa17.68■□□□□ 0.42
CLN3-252ENST00000636907 PRDM5Q9NQX1 630 aaPredicted RBP17.68■□□□□ 0.42
CLN3-252ENST00000636907 PCSK1NQ9UHG2 260 aa17.68■□□□□ 0.42
CLN3-252ENST00000636907 MTUS1Q9ULD2 1270 aa17.68■□□□□ 0.42
CLN3-252ENST00000636907 FAN1Q9Y2M0 1017 aa17.68■□□□□ 0.42
CLN3-252ENST00000636907 ZSCAN5CA6NGD5 496 aaPredicted RBP17.67■□□□□ 0.42
CLN3-252ENST00000636907 SYN3O14994 580 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 SEC31AO94979 1220 aaKnown RBP17.67■□□□□ 0.42
CLN3-252ENST00000636907 OAZ2O95190 189 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 TRUB2O95900 331 aaKnown RBP17.67■□□□□ 0.42
CLN3-252ENST00000636907 TIMP1P01033 207 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 GALTP07902 379 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 KRT7P08729 469 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 BDNFP23560 247 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 TKTL1P51854 596 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 MRPS5P82675 430 aaKnown RBP17.67■□□□□ 0.42
CLN3-252ENST00000636907 ATP11AP98196 1134 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 PPP2R5EQ16537 467 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 KCNT1Q5JUK3 1230 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 TMCO3Q6UWJ1 677 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 MFSD7Q6UXD7 560 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 ARCQ7LC44 396 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 GPRIN1Q7Z2K8 1008 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 SIX6OS1Q8N1H7 587 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 LRRC43Q8N309 656 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 CSNK1G1Q9HCP0 422 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 USP18Q9UMW8 372 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 NT5C1B-RDH14C9J2C7 533 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 HHLA1C9JL84 531 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 OR4Q2P0C623 313 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 PBX3P40426 434 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 KLF1Q13351 362 aaPredicted RBP17.67■□□□□ 0.42
CLN3-252ENST00000636907 MAPRE1Q15691 268 aaKnown RBP17.67■□□□□ 0.42
CLN3-252ENST00000636907 CYP1B1Q16678 543 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 RAB41Q5JT25 222 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 EFHC1Q5JVL4 640 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 VARS2Q5ST30 1063 aaKnown RBP17.67■□□□□ 0.42
CLN3-252ENST00000636907 FAM171A1Q5VUB5 890 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 SPOCD1Q6ZMY3 1216 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 CCDC26Q8TAB7 109 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 FAM172AQ8WUF8 416 aa17.67■□□□□ 0.42
CLN3-252ENST00000636907 MAGOHBQ96A72 148 aaKnown RBP17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms