RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 TDRD10Q5VZ19 366 aaKnown RBP17.2■□□□□ 0.34
CLN3-246ENST00000636228 TTC30AQ86WT1 665 aa17.2■□□□□ 0.34
CLN3-246ENST00000636228 ADGRG2Q8IZP9 1017 aa17.2■□□□□ 0.34
CLN3-246ENST00000636228 TSTD1Q8NFU3 115 aa17.2■□□□□ 0.34
CLN3-246ENST00000636228 USP33Q8TEY7 942 aa17.2■□□□□ 0.34
CLN3-246ENST00000636228 ACDQ96AP0 544 aa17.2■□□□□ 0.34
CLN3-246ENST00000636228 KCNK16Q96T55 309 aa17.2■□□□□ 0.34
CLN3-246ENST00000636228 XYLT2Q9H1B5 865 aa17.2■□□□□ 0.34
CLN3-246ENST00000636228 SMYD3Q9H7B4 428 aa17.2■□□□□ 0.34
CLN3-246ENST00000636228 CFAP97Q9P2B7 532 aa17.2■□□□□ 0.34
CLN3-246ENST00000636228 CHORDC1Q9UHD1 332 aaPredicted RBP17.2■□□□□ 0.34
CLN3-246ENST00000636228 OBSL1O75147 1896 aa17.19■□□□□ 0.34
CLN3-246ENST00000636228 CLSTN1O94985 981 aa17.19■□□□□ 0.34
CLN3-246ENST00000636228 GBP1P32455 592 aa17.19■□□□□ 0.34
CLN3-246ENST00000636228 PDE6CP51160 858 aa17.19■□□□□ 0.34
CLN3-246ENST00000636228 SLC7A9P82251 487 aa17.19■□□□□ 0.34
CLN3-246ENST00000636228 CREB5Q02930 508 aa17.19■□□□□ 0.34
CLN3-246ENST00000636228 DHCR24Q15392 516 aa17.19■□□□□ 0.34
CLN3-246ENST00000636228 B3GALNT2Q8NCR0 500 aa17.19■□□□□ 0.34
CLN3-246ENST00000636228 CEP295NLQ96MC4 621 aa17.19■□□□□ 0.34
CLN3-246ENST00000636228 ZDHHC4Q9NPG8 344 aa17.19■□□□□ 0.34
CLN3-246ENST00000636228 EBF1Q9UH73 591 aa17.19■□□□□ 0.34
CLN3-246ENST00000636228 PCDHA7Q9UN72 937 aa17.19■□□□□ 0.34
CLN3-246ENST00000636228 TM4SF5O14894 197 aa17.18■□□□□ 0.34
CLN3-246ENST00000636228 EXOC3O60645 756 aa17.18■□□□□ 0.34
CLN3-246ENST00000636228 OAS1P00973 400 aaKnown RBP17.18■□□□□ 0.34
CLN3-246ENST00000636228 MBL2P11226 248 aaPredicted RBP17.18■□□□□ 0.34
CLN3-246ENST00000636228 HNRNPLP14866 589 aaKnown RBP eCLIP17.18■□□□□ 0.34
CLN3-246ENST00000636228 PPP3CCP48454 512 aa17.18■□□□□ 0.34
CLN3-246ENST00000636228 ELF2Q15723 593 aa17.18■□□□□ 0.34
CLN3-246ENST00000636228 N4BP2L1Q5TBK1 243 aaPredicted RBP17.18■□□□□ 0.34
CLN3-246ENST00000636228 EMC10Q5UCC4 262 aa17.18■□□□□ 0.34
CLN3-246ENST00000636228 ANO7Q6IWH7 933 aa17.18■□□□□ 0.34
CLN3-246ENST00000636228 RHBDF2Q6PJF5 856 aa17.18■□□□□ 0.34
CLN3-246ENST00000636228 SCARA5Q6ZMJ2 495 aa17.18■□□□□ 0.34
CLN3-246ENST00000636228 C12orf40Q86WS4 652 aa17.18■□□□□ 0.34
CLN3-246ENST00000636228 SCAMP5Q8TAC9 235 aa17.18■□□□□ 0.34
CLN3-246ENST00000636228 MED10Q9BTT4 135 aa17.18■□□□□ 0.34
CLN3-246ENST00000636228 ELOVL4Q9GZR5 314 aa17.18■□□□□ 0.34
CLN3-246ENST00000636228 VPS45Q9NRW7 570 aa17.18■□□□□ 0.34
CLN3-246ENST00000636228 EHD2Q9NZN4 543 aa17.18■□□□□ 0.34
CLN3-246ENST00000636228 PCDHGA5Q9Y5G8 931 aa17.18■□□□□ 0.34
CLN3-246ENST00000636228 UBE4BO95155 1302 aa17.18■□□□□ 0.34
CLN3-246ENST00000636228 RHOBTB1O94844 696 aa17.17■□□□□ 0.34
CLN3-246ENST00000636228 OLFM2O95897 454 aa17.17■□□□□ 0.34
CLN3-246ENST00000636228 FAM163BP0C2L3 166 aa17.17■□□□□ 0.34
CLN3-246ENST00000636228 PFKLP17858 780 aa17.17■□□□□ 0.34
CLN3-246ENST00000636228 YWHAQP27348 245 aa17.17■□□□□ 0.34
CLN3-246ENST00000636228 TIE1P35590 1138 aa17.17■□□□□ 0.34
CLN3-246ENST00000636228 ME1P48163 572 aa17.17■□□□□ 0.34
CLN3-246ENST00000636228 LIMK1P53667 647 aa17.17■□□□□ 0.34
CLN3-246ENST00000636228 ORC1Q13415 861 aa17.17■□□□□ 0.34
CLN3-246ENST00000636228 BIRC3Q13489 604 aa17.17■□□□□ 0.34
CLN3-246ENST00000636228 KNOP1Q1ED39 458 aaKnown RBP17.17■□□□□ 0.34
CLN3-246ENST00000636228 BMT2Q1RMZ1 405 aa17.17■□□□□ 0.34
CLN3-246ENST00000636228 TMEM92Q6UXU6 159 aa17.17■□□□□ 0.34
CLN3-246ENST00000636228 PAQR9Q6ZVX9 377 aa17.17■□□□□ 0.34
CLN3-246ENST00000636228 NUP93Q8N1F7 819 aa17.17■□□□□ 0.34
CLN3-246ENST00000636228 FBXO32Q969P5 355 aa17.17■□□□□ 0.34
CLN3-246ENST00000636228 SYAP1Q96A49 352 aaPredicted RBP17.17■□□□□ 0.34
CLN3-246ENST00000636228 SLITRK1Q96PX8 696 aa17.17■□□□□ 0.34
CLN3-246ENST00000636228 SDCBP2Q9H190 292 aa17.17■□□□□ 0.34
CLN3-246ENST00000636228 SERTAD1Q9UHV2 236 aa17.17■□□□□ 0.34
CLN3-246ENST00000636228 ATG2BQ96BY7 2078 aa17.17■□□□□ 0.34
CLN3-246ENST00000636228 DENND4CQ5VZ89 1909 aa17.17■□□□□ 0.34
CLN3-246ENST00000636228 SDK1Q7Z5N4 2213 aa17.16■□□□□ 0.34
CLN3-246ENST00000636228 PVALEFA0A1B0GWK0 134 aa17.16■□□□□ 0.34
CLN3-246ENST00000636228 LRRIQ3A6PVS8 624 aaPredicted RBP17.16■□□□□ 0.34
CLN3-246ENST00000636228 COCHO43405 550 aa17.16■□□□□ 0.34
CLN3-246ENST00000636228 VNN1O95497 513 aa17.16■□□□□ 0.34
CLN3-246ENST00000636228 STAU1O95793 577 aaKnown RBP17.16■□□□□ 0.34
CLN3-246ENST00000636228 CAVIN2O95810 425 aa17.16■□□□□ 0.34
CLN3-246ENST00000636228 ZSCAN22P10073 491 aaPredicted RBP17.16■□□□□ 0.34
CLN3-246ENST00000636228 BCKDHBP21953 392 aa17.16■□□□□ 0.34
CLN3-246ENST00000636228 ATICP31939 592 aa17.16■□□□□ 0.34
CLN3-246ENST00000636228 SNRPFP62306 86 aaKnown RBP17.16■□□□□ 0.34
CLN3-246ENST00000636228 KDSRQ06136 332 aa17.16■□□□□ 0.34
CLN3-246ENST00000636228 STK4Q13043 487 aa17.16■□□□□ 0.34
CLN3-246ENST00000636228 ZNF699Q32M78 642 aa17.16■□□□□ 0.34
CLN3-246ENST00000636228 RESP18Q5W5W9 173 aa17.16■□□□□ 0.34
CLN3-246ENST00000636228 RNF43Q68DV7 783 aa17.16■□□□□ 0.34
CLN3-246ENST00000636228 FAM35AQ86V20 835 aa17.16■□□□□ 0.34
CLN3-246ENST00000636228 C12orf56Q8IXR9 622 aa17.16■□□□□ 0.34
CLN3-246ENST00000636228 ALLCQ8N6M5 410 aa17.16■□□□□ 0.34
CLN3-246ENST00000636228 SPRYD3Q8NCJ5 442 aa17.16■□□□□ 0.34
CLN3-246ENST00000636228 MDGA1Q8NFP4 955 aa17.16■□□□□ 0.34
CLN3-246ENST00000636228 WBP2Q969T9 261 aa17.16■□□□□ 0.34
CLN3-246ENST00000636228 CHAMP1Q96JM3 812 aa17.16■□□□□ 0.34
CLN3-246ENST00000636228 PNKPQ96T60 521 aa17.16■□□□□ 0.34
CLN3-246ENST00000636228 CCSER2Q9H7U1 834 aa17.16■□□□□ 0.34
CLN3-246ENST00000636228 MAGEF1Q9HAY2 307 aa17.16■□□□□ 0.34
CLN3-246ENST00000636228 FAM13BQ9NYF5 915 aa17.16■□□□□ 0.34
CLN3-246ENST00000636228 CIZ1Q9ULV3 898 aaPredicted RBP17.16■□□□□ 0.34
CLN3-246ENST00000636228 MMP17Q9ULZ9 603 aa17.16■□□□□ 0.34
CLN3-246ENST00000636228 BCLAF3A2AJT9 711 aaKnown RBP17.15■□□□□ 0.34
CLN3-246ENST00000636228 KLRC4O43908 158 aa17.15■□□□□ 0.34
CLN3-246ENST00000636228 KAT7O95251 611 aa17.15■□□□□ 0.34
CLN3-246ENST00000636228 KLF8O95600 359 aaPredicted RBP17.15■□□□□ 0.34
CLN3-246ENST00000636228 F13A1P00488 732 aa17.15■□□□□ 0.34
CLN3-246ENST00000636228 C4BPAP04003 597 aaKnown RBP17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms