RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 FGF13Q92913 245 aa19.13■□□□□ 0.65
CLN3-239ENST00000628023 KCNK16Q96T55 309 aa19.13■□□□□ 0.65
CLN3-239ENST00000628023 ATXN3LQ9H3M9 355 aa19.13■□□□□ 0.65
CLN3-239ENST00000628023 PLCB1Q9NQ66 1216 aa19.13■□□□□ 0.65
CLN3-239ENST00000628023 TMEM30AQ9NV96 361 aa19.13■□□□□ 0.65
CLN3-239ENST00000628023 AJAP1Q9UKB5 411 aaPredicted RBP19.13■□□□□ 0.65
CLN3-239ENST00000628023 CDH7Q9ULB5 785 aa19.13■□□□□ 0.65
CLN3-239ENST00000628023 MYH10P35580 1976 aa19.13■□□□□ 0.65
CLN3-239ENST00000628023 PROB1E7EW31 1015 aa19.12■□□□□ 0.65
CLN3-239ENST00000628023 RNF225M0QZC1 329 aaPredicted RBP19.12■□□□□ 0.65
CLN3-239ENST00000628023 NARSO43776 548 aaKnown RBP19.12■□□□□ 0.65
CLN3-239ENST00000628023 HMGA1P17096 107 aaKnown RBP19.12■□□□□ 0.65
CLN3-239ENST00000628023 BRD2P25440 801 aaKnown RBP19.12■□□□□ 0.65
CLN3-239ENST00000628023 ZNF132P52740 706 aa19.12■□□□□ 0.65
CLN3-239ENST00000628023 TEAD2Q15562 447 aa19.12■□□□□ 0.65
CLN3-239ENST00000628023 CWF19L1Q69YN2 538 aaKnown RBP19.12■□□□□ 0.65
CLN3-239ENST00000628023 CLEC20AQ6ZU45 233 aa19.12■□□□□ 0.65
CLN3-239ENST00000628023 NPAS3Q8IXF0 933 aa19.12■□□□□ 0.65
CLN3-239ENST00000628023 NUP93Q8N1F7 819 aa19.12■□□□□ 0.65
CLN3-239ENST00000628023 SHC3Q92529 594 aa19.12■□□□□ 0.65
CLN3-239ENST00000628023 TRMT2BQ96GJ1 504 aaKnown RBP19.12■□□□□ 0.65
CLN3-239ENST00000628023 ERGIC2Q96RQ1 377 aa19.12■□□□□ 0.65
CLN3-239ENST00000628023 SMOQ99835 787 aa19.12■□□□□ 0.65
CLN3-239ENST00000628023 LRRC3Q9BY71 257 aa19.12■□□□□ 0.65
CLN3-239ENST00000628023 RTN4Q9NQC3 1192 aaKnown RBP19.12■□□□□ 0.65
CLN3-239ENST00000628023 TSPAN16Q9UKR8 245 aa19.12■□□□□ 0.65
CLN3-239ENST00000628023 THAP12O43422 761 aa19.11■□□□□ 0.65
CLN3-239ENST00000628023 BEST1O76090 585 aa19.11■□□□□ 0.65
CLN3-239ENST00000628023 MICAL2O94851 1124 aa19.11■□□□□ 0.65
CLN3-239ENST00000628023 RTN3O95197 1032 aaPredicted RBP19.11■□□□□ 0.65
CLN3-239ENST00000628023 CALCAP01258 141 aa19.11■□□□□ 0.65
CLN3-239ENST00000628023 GNA15P30679 374 aa19.11■□□□□ 0.65
CLN3-239ENST00000628023 SLC5A3P53794 718 aa19.11■□□□□ 0.65
CLN3-239ENST00000628023 BCAT1P54687 386 aa19.11■□□□□ 0.65
CLN3-239ENST00000628023 POLR2FP61218 127 aaKnown RBP19.11■□□□□ 0.65
CLN3-239ENST00000628023 FANCCQ00597 558 aa19.11■□□□□ 0.65
CLN3-239ENST00000628023 DRAP1Q14919 205 aaPredicted RBP19.11■□□□□ 0.65
CLN3-239ENST00000628023 STILQ15468 1287 aa19.11■□□□□ 0.65
CLN3-239ENST00000628023 SHKBP1Q8TBC3 707 aa19.11■□□□□ 0.65
CLN3-239ENST00000628023 MCRS1Q96EZ8 462 aa19.11■□□□□ 0.65
CLN3-239ENST00000628023 DUSP16Q9BY84 665 aa19.11■□□□□ 0.65
CLN3-239ENST00000628023 GANQ9H2C0 597 aa19.11■□□□□ 0.65
CLN3-239ENST00000628023 CSNK1G1Q9HCP0 422 aa19.11■□□□□ 0.65
CLN3-239ENST00000628023 CNTN6Q9UQ52 1028 aa19.11■□□□□ 0.65
CLN3-239ENST00000628023 SIK3Q9Y2K2 1263 aa19.11■□□□□ 0.65
CLN3-239ENST00000628023 NOTCH4Q99466 2003 aa19.1■□□□□ 0.65
CLN3-239ENST00000628023 A0A1B0GTH6 734 aa19.1■□□□□ 0.65
CLN3-239ENST00000628023 ANHXE9PGG2 379 aa19.1■□□□□ 0.65
CLN3-239ENST00000628023 M0QYV0 167 aa19.1■□□□□ 0.65
CLN3-239ENST00000628023 O00370 1275 aa19.1■□□□□ 0.65
CLN3-239ENST00000628023 TEX33O43247 280 aa19.1■□□□□ 0.65
CLN3-239ENST00000628023 MED7O43513 233 aa19.1■□□□□ 0.65
CLN3-239ENST00000628023 PI15O43692 258 aa19.1■□□□□ 0.65
CLN3-239ENST00000628023 PNMA6AP0CW24 399 aaPredicted RBP19.1■□□□□ 0.65
CLN3-239ENST00000628023 NBL1P41271 181 aa19.1■□□□□ 0.65
CLN3-239ENST00000628023 USP46P62068 366 aa19.1■□□□□ 0.65
CLN3-239ENST00000628023 CYP4F8P98187 520 aa19.1■□□□□ 0.65
CLN3-239ENST00000628023 GAREM2Q75VX8 874 aa19.1■□□□□ 0.65
CLN3-239ENST00000628023 CCDC105Q8IYK2 499 aa19.1■□□□□ 0.65
CLN3-239ENST00000628023 ANKRD52Q8NB46 1076 aa19.1■□□□□ 0.65
CLN3-239ENST00000628023 DTWD2Q8NBA8 298 aa19.1■□□□□ 0.65
CLN3-239ENST00000628023 ZMIZ2Q8NF64 920 aa19.1■□□□□ 0.65
CLN3-239ENST00000628023 TFAP2BQ92481 460 aa19.1■□□□□ 0.65
CLN3-239ENST00000628023 MRPS31Q92665 395 aaKnown RBP19.1■□□□□ 0.65
CLN3-239ENST00000628023 MYRFLQ96LU7 910 aa19.1■□□□□ 0.65
CLN3-239ENST00000628023 SLITRK1Q96PX8 696 aa19.1■□□□□ 0.65
CLN3-239ENST00000628023 SPAG5Q96R06 1193 aa19.1■□□□□ 0.65
CLN3-239ENST00000628023 STK33Q9BYT3 514 aa19.1■□□□□ 0.65
CLN3-239ENST00000628023 IL21Q9HBE4 155 aa19.1■□□□□ 0.65
CLN3-239ENST00000628023 GDE1Q9NZC3 331 aa19.1■□□□□ 0.65
CLN3-239ENST00000628023 CA14Q9ULX7 337 aa19.1■□□□□ 0.65
CLN3-239ENST00000628023 DAAM1Q9Y4D1 1078 aa19.1■□□□□ 0.65
CLN3-239ENST00000628023 DOCK8Q8NF50 2099 aa19.1■□□□□ 0.65
CLN3-239ENST00000628023 CYP26A1O43174 497 aa19.09■□□□□ 0.65
CLN3-239ENST00000628023 MOSPD3O75425 235 aa19.09■□□□□ 0.65
CLN3-239ENST00000628023 SETSIPP0DME0 302 aa19.09■□□□□ 0.65
CLN3-239ENST00000628023 YWHAQP27348 245 aa19.09■□□□□ 0.65
CLN3-239ENST00000628023 UBASH3AP57075 661 aa19.09■□□□□ 0.65
CLN3-239ENST00000628023 PTK2Q05397 1052 aa19.09■□□□□ 0.65
CLN3-239ENST00000628023 BST2Q10589 180 aaKnown RBP19.09■□□□□ 0.65
CLN3-239ENST00000628023 HTR4Q13639 388 aa19.09■□□□□ 0.65
CLN3-239ENST00000628023 GPR158Q5T848 1215 aa19.09■□□□□ 0.65
CLN3-239ENST00000628023 DPY19L2P1Q6NXN4 242 aa19.09■□□□□ 0.65
CLN3-239ENST00000628023 MTSS1LQ765P7 747 aa19.09■□□□□ 0.65
CLN3-239ENST00000628023 TTC30AQ86WT1 665 aa19.09■□□□□ 0.65
CLN3-239ENST00000628023 UBA3Q8TBC4 463 aa19.09■□□□□ 0.65
CLN3-239ENST00000628023 FBXO32Q969P5 355 aa19.09■□□□□ 0.65
CLN3-239ENST00000628023 NAP1L5Q96NT1 182 aaPredicted RBP19.09■□□□□ 0.65
CLN3-239ENST00000628023 TTLL2Q9BWV7 592 aa19.09■□□□□ 0.65
CLN3-239ENST00000628023 FBXO44Q9H4M3 255 aa19.09■□□□□ 0.65
CLN3-239ENST00000628023 TRPC7Q9HCX4 862 aa19.09■□□□□ 0.65
CLN3-239ENST00000628023 NLRC4Q9NPP4 1024 aa19.09■□□□□ 0.65
CLN3-239ENST00000628023 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.09■□□□□ 0.65
CLN3-239ENST00000628023 NUMBLQ9Y6R0 609 aa19.09■□□□□ 0.65
CLN3-239ENST00000628023 PTPRZ1P23471 2315 aaPredicted RBP19.09■□□□□ 0.65
CLN3-239ENST00000628023 KRBA1A5PL33 1030 aa19.08■□□□□ 0.64
CLN3-239ENST00000628023 F8VZ95 297 aa19.08■□□□□ 0.64
CLN3-239ENST00000628023 FOXN3O00409 490 aaPredicted RBP19.08■□□□□ 0.64
CLN3-239ENST00000628023 NRG2O14511 850 aaPredicted RBP19.08■□□□□ 0.64
CLN3-239ENST00000628023 ABL1P00519 1130 aa19.08■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms