RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 IFT20Q8IY31 132 aa11.05□□□□□ -0.64
VPS11-208ENST00000621676 FUKQ8N0W3 1084 aa11.05□□□□□ -0.64
VPS11-208ENST00000621676 DDX23Q9BUQ8 820 aaKnown RBP11.05□□□□□ -0.64
VPS11-208ENST00000621676 USP18Q9UMW8 372 aa11.05□□□□□ -0.64
VPS11-208ENST00000621676 CCDC151A5D8V7 595 aa11.05□□□□□ -0.64
VPS11-208ENST00000621676 YJEFN3A6XGL0 299 aa11.05□□□□□ -0.64
VPS11-208ENST00000621676 E7ENQ6 273 aa11.05□□□□□ -0.64
VPS11-208ENST00000621676 MED7O43513 233 aa11.05□□□□□ -0.64
VPS11-208ENST00000621676 NBNO60934 754 aa11.05□□□□□ -0.64
VPS11-208ENST00000621676 PECAM1P16284 738 aaPredicted RBP11.05□□□□□ -0.64
VPS11-208ENST00000621676 RFX1P22670 979 aa11.05□□□□□ -0.64
VPS11-208ENST00000621676 SDC4P31431 198 aa11.05□□□□□ -0.64
VPS11-208ENST00000621676 CTNNA1P35221 906 aaKnown RBP11.05□□□□□ -0.64
VPS11-208ENST00000621676 RPL21P46778 160 aaKnown RBP11.05□□□□□ -0.64
VPS11-208ENST00000621676 GDF10P55107 478 aa11.05□□□□□ -0.64
VPS11-208ENST00000621676 KIAA1841Q6NSI8 718 aa11.05□□□□□ -0.64
VPS11-208ENST00000621676 HDXQ7Z353 690 aa11.05□□□□□ -0.64
VPS11-208ENST00000621676 CXorf38Q8TB03 319 aa11.05□□□□□ -0.64
VPS11-208ENST00000621676 ACTL9Q8TC94 416 aa11.05□□□□□ -0.64
VPS11-208ENST00000621676 PEBP4Q96S96 227 aa11.05□□□□□ -0.64
VPS11-208ENST00000621676 SYT15Q9BQS2 421 aa11.05□□□□□ -0.64
VPS11-208ENST00000621676 CRTAC1Q9NQ79 661 aa11.05□□□□□ -0.64
VPS11-208ENST00000621676 STXBP5LQ9Y2K9 1186 aa11.05□□□□□ -0.64
VPS11-208ENST00000621676 TMEM191CA6NGB0 347 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 KIAA0391O15091 583 aaKnown RBP11.04□□□□□ -0.64
VPS11-208ENST00000621676 AVILO75366 819 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 AMPD1P23109 780 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 GPS1Q13098 491 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 CFAP58Q5T655 872 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 RHOT1Q8IXI2 618 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 PNPLA1Q8N8W4 532 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 APOL2Q9BQE5 337 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 SEMA4AQ9H3S1 761 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 IL1RAPL1Q9NZN1 696 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 FNDC3AQ9Y2H6 1198 aaKnown RBP11.04□□□□□ -0.64
VPS11-208ENST00000621676 C2CD2Q9Y426 696 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 WDR81Q562E7 1941 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 PLXNB2O15031 1838 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 CHD9Q3L8U1 2897 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 AMHP03971 560 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 SHBGP04278 402 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 PFKMP08237 780 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 VDRP11473 427 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 CSF2RAP15509 400 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 KYNUQ16719 465 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 CCDC185Q8N715 623 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 OR10T2Q8NGX3 314 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 CCDC26Q8TAB7 109 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 PBKQ96KB5 322 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 GPR62Q9BZJ7 368 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 TMEM39AQ9NV64 488 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 ETNK2Q9NVF9 386 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 RBBP6Q7Z6E9 1792 aaKnown RBP11.04□□□□□ -0.64
VPS11-208ENST00000621676 DCDC2CA8MYV0 355 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 KCNK1O00180 336 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 CHKAP35790 457 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 CRADDP78560 199 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 OTUD4Q01804 1114 aaKnown RBP11.04□□□□□ -0.64
VPS11-208ENST00000621676 PTP4A2Q12974 167 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 OVOS1Q6IE37 1185 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 THOC1Q96FV9 657 aaKnown RBP11.04□□□□□ -0.64
VPS11-208ENST00000621676 CALCOCO1Q9P1Z2 691 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 UVRAGQ9P2Y5 699 aa11.04□□□□□ -0.64
VPS11-208ENST00000621676 USP12O75317 370 aa11.03□□□□□ -0.64
VPS11-208ENST00000621676 CALB1P05937 261 aa11.03□□□□□ -0.64
VPS11-208ENST00000621676 SULT1E1P49888 294 aa11.03□□□□□ -0.64
VPS11-208ENST00000621676 EP400NLQ6ZTU2 488 aa11.03□□□□□ -0.64
VPS11-208ENST00000621676 LRRC8DQ7L1W4 858 aa11.03□□□□□ -0.64
VPS11-208ENST00000621676 DDX27Q96GQ7 796 aaKnown RBP11.03□□□□□ -0.64
VPS11-208ENST00000621676 TBCBQ99426 244 aa11.03□□□□□ -0.64
VPS11-208ENST00000621676 PAIP2Q9BPZ3 127 aaKnown RBP11.03□□□□□ -0.64
VPS11-208ENST00000621676 DDIT4Q9NX09 232 aa11.03□□□□□ -0.64
VPS11-208ENST00000621676 SMPD4Q9NXE4 827 aa11.03□□□□□ -0.64
VPS11-208ENST00000621676 PLAAQ9Y263 795 aa11.03□□□□□ -0.64
VPS11-208ENST00000621676 PCDHA3Q9Y5H8 950 aa11.03□□□□□ -0.64
VPS11-208ENST00000621676 NUP205Q92621 2012 aa11.03□□□□□ -0.64
VPS11-208ENST00000621676 F5P12259 2224 aa11.03□□□□□ -0.64
VPS11-208ENST00000621676 POC1B-GALNT4F8VUJ3 575 aa11.03□□□□□ -0.64
VPS11-208ENST00000621676 ENDOD1O94919 500 aa11.03□□□□□ -0.64
VPS11-208ENST00000621676 ARSEP51690 589 aa11.03□□□□□ -0.64
VPS11-208ENST00000621676 CNGA2Q16280 664 aa11.03□□□□□ -0.64
VPS11-208ENST00000621676 P3H1Q32P28 736 aa11.03□□□□□ -0.64
VPS11-208ENST00000621676 CLLU1OSQ5K130 101 aa11.03□□□□□ -0.64
VPS11-208ENST00000621676 DARS2Q6PI48 645 aaKnown RBP11.03□□□□□ -0.64
VPS11-208ENST00000621676 SPATA18Q8TC71 538 aa11.03□□□□□ -0.64
VPS11-208ENST00000621676 ZIM3Q96PE6 472 aa11.03□□□□□ -0.64
VPS11-208ENST00000621676 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.03□□□□□ -0.64
VPS11-208ENST00000621676 CTNNAL1Q9UBT7 734 aa11.03□□□□□ -0.64
VPS11-208ENST00000621676 XPO7Q9UIA9 1087 aaKnown RBP11.03□□□□□ -0.64
VPS11-208ENST00000621676 PCDHB7Q9Y5E2 793 aa11.03□□□□□ -0.64
VPS11-208ENST00000621676 CCDC66A2RUB6 948 aa11.02□□□□□ -0.64
VPS11-208ENST00000621676 ECEL1O95672 775 aa11.02□□□□□ -0.64
VPS11-208ENST00000621676 ITGB8P26012 769 aa11.02□□□□□ -0.64
VPS11-208ENST00000621676 SLC8A3P57103 927 aa11.02□□□□□ -0.64
VPS11-208ENST00000621676 FAM187BQ17R55 369 aa11.02□□□□□ -0.64
VPS11-208ENST00000621676 MYLPFQ96A32 169 aa11.02□□□□□ -0.64
VPS11-208ENST00000621676 KLF6Q99612 283 aaPredicted RBP11.02□□□□□ -0.64
VPS11-208ENST00000621676 IP6K2Q9UHH9 426 aa11.02□□□□□ -0.64
VPS11-208ENST00000621676 PLXNA1Q9UIW2 1896 aa11.02□□□□□ -0.64
VPS11-208ENST00000621676 TTC24A2A3L6 582 aaPredicted RBP11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms