RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 IFIT1BQ5T764 474 aaKnown RBP6.24□□□□□ -1.41
VPS29-212ENST00000621131 ARHGAP40Q5TG30 622 aa6.24□□□□□ -1.41
VPS29-212ENST00000621131 ATG4AQ8WYN0 398 aa6.24□□□□□ -1.41
VPS29-212ENST00000621131 ZNF778Q96MU6 729 aa6.24□□□□□ -1.41
VPS29-212ENST00000621131 CPA4Q9UI42 421 aa6.24□□□□□ -1.41
VPS29-212ENST00000621131 NDRG4Q9ULP0 352 aaKnown RBP6.24□□□□□ -1.41
VPS29-212ENST00000621131 SETD1AO15047 1707 aaKnown RBP6.24□□□□□ -1.41
VPS29-212ENST00000621131 EFCAB6Q5THR3 1501 aa6.24□□□□□ -1.41
VPS29-212ENST00000621131 LMTK2Q8IWU2 1503 aa6.24□□□□□ -1.41
VPS29-212ENST00000621131 ZNF335Q9H4Z2 1342 aaPredicted RBP6.24□□□□□ -1.41
VPS29-212ENST00000621131 WDR91A4D1P6 747 aa6.23□□□□□ -1.41
VPS29-212ENST00000621131 ERC2O15083 957 aa6.23□□□□□ -1.41
VPS29-212ENST00000621131 THP07101 528 aa6.23□□□□□ -1.41
VPS29-212ENST00000621131 CLCN2P51788 898 aa6.23□□□□□ -1.41
VPS29-212ENST00000621131 UCP3P55916 312 aa6.23□□□□□ -1.41
VPS29-212ENST00000621131 EEFSECP57772 596 aaKnown RBP6.23□□□□□ -1.41
VPS29-212ENST00000621131 E2F2Q14209 437 aa6.23□□□□□ -1.41
VPS29-212ENST00000621131 TTF1Q15361 905 aaPredicted RBP6.23□□□□□ -1.41
VPS29-212ENST00000621131 FANCBQ8NB91 859 aa6.23□□□□□ -1.41
VPS29-212ENST00000621131 MTFMTQ96DP5 389 aaKnown RBP6.23□□□□□ -1.41
VPS29-212ENST00000621131 MOGAT1Q96PD6 335 aa6.23□□□□□ -1.41
VPS29-212ENST00000621131 DUSP22Q9NRW4 184 aa6.23□□□□□ -1.41
VPS29-212ENST00000621131 DDX56Q9NY93 547 aaKnown RBP6.23□□□□□ -1.41
VPS29-212ENST00000621131 SH3BP4Q9P0V3 963 aa6.23□□□□□ -1.41
VPS29-212ENST00000621131 GABBR1Q9UBS5 961 aa6.23□□□□□ -1.41
VPS29-212ENST00000621131 KIF1BO60333 1816 aa6.22□□□□□ -1.41
VPS29-212ENST00000621131 CAMSAP1Q5T5Y3 1602 aa6.22□□□□□ -1.41
VPS29-212ENST00000621131 MROH1Q8NDA8 1641 aa6.22□□□□□ -1.41
VPS29-212ENST00000621131 NCLP19338 710 aaKnown RBP6.22□□□□□ -1.41
VPS29-212ENST00000621131 ZNF81P51508 661 aa6.22□□□□□ -1.41
VPS29-212ENST00000621131 ATXN1P54253 815 aaKnown RBP6.22□□□□□ -1.41
VPS29-212ENST00000621131 RAB1AP62820 205 aa6.22□□□□□ -1.41
VPS29-212ENST00000621131 SRSF7Q16629 238 aaKnown RBP eCLIP6.22□□□□□ -1.41
VPS29-212ENST00000621131 SLC44A4Q53GD3 710 aa6.22□□□□□ -1.41
VPS29-212ENST00000621131 PCID2Q5JVF3 399 aa6.22□□□□□ -1.41
VPS29-212ENST00000621131 ZNF425Q6IV72 752 aa6.22□□□□□ -1.41
VPS29-212ENST00000621131 RGS7BPQ6MZT1 257 aaPredicted RBP6.22□□□□□ -1.41
VPS29-212ENST00000621131 B3GNT9Q6UX72 402 aa6.22□□□□□ -1.41
VPS29-212ENST00000621131 SLC29A4Q7RTT9 530 aa6.22□□□□□ -1.41
VPS29-212ENST00000621131 VGLL2Q8N8G2 317 aa6.22□□□□□ -1.41
VPS29-212ENST00000621131 SCARB1Q8WTV0 552 aa6.22□□□□□ -1.41
VPS29-212ENST00000621131 SMG7Q92540 1137 aaKnown RBP6.22□□□□□ -1.41
VPS29-212ENST00000621131 GLG1Q92896 1179 aa6.22□□□□□ -1.41
VPS29-212ENST00000621131 AIFM3Q96NN9 605 aa6.22□□□□□ -1.41
VPS29-212ENST00000621131 MESP1Q9BRJ9 268 aa6.22□□□□□ -1.41
VPS29-212ENST00000621131 RTFDC1Q9BY42 306 aaPredicted RBP6.22□□□□□ -1.41
VPS29-212ENST00000621131 ZNF70Q9UC06 446 aaPredicted RBP6.22□□□□□ -1.41
VPS29-212ENST00000621131 STAP2Q9UGK3 403 aa6.22□□□□□ -1.41
VPS29-212ENST00000621131 TMX2Q9Y320 296 aa6.22□□□□□ -1.41
VPS29-212ENST00000621131 REREQ9P2R6 1566 aa6.22□□□□□ -1.41
VPS29-212ENST00000621131 POLR1AO95602 1720 aaPredicted RBP6.22□□□□□ -1.41
VPS29-212ENST00000621131 PLA2R1Q13018 1463 aa6.22□□□□□ -1.41
VPS29-212ENST00000621131 CPS1P31327 1500 aa6.21□□□□□ -1.42
VPS29-212ENST00000621131 C3P01024 1663 aa6.21□□□□□ -1.42
VPS29-212ENST00000621131 A1L4Q6 167 aa6.21□□□□□ -1.42
VPS29-212ENST00000621131 TISP43B9A030 160 aa6.21□□□□□ -1.42
VPS29-212ENST00000621131 H3BML4 177 aa6.21□□□□□ -1.42
VPS29-212ENST00000621131 hCG_1984214I3L0E3 225 aa6.21□□□□□ -1.42
VPS29-212ENST00000621131 QSOX1O00391 747 aa6.21□□□□□ -1.42
VPS29-212ENST00000621131 AKAP10O43572 662 aa6.21□□□□□ -1.42
VPS29-212ENST00000621131 FESP07332 822 aa6.21□□□□□ -1.42
VPS29-212ENST00000621131 PDGFRBP09619 1106 aa6.21□□□□□ -1.42
VPS29-212ENST00000621131 SLC11A2P49281 568 aa6.21□□□□□ -1.42
VPS29-212ENST00000621131 ARFIP2P53365 341 aa6.21□□□□□ -1.42
VPS29-212ENST00000621131 PIN1Q13526 163 aaPredicted RBP6.21□□□□□ -1.42
VPS29-212ENST00000621131 GGT6Q6P531 493 aa6.21□□□□□ -1.42
VPS29-212ENST00000621131 ZNF66Q6ZN08 573 aa6.21□□□□□ -1.42
VPS29-212ENST00000621131 PARS2Q7L3T8 475 aaKnown RBP6.21□□□□□ -1.42
VPS29-212ENST00000621131 ZNF280BQ86YH2 543 aa6.21□□□□□ -1.42
VPS29-212ENST00000621131 SLC35G2Q8TBE7 412 aa6.21□□□□□ -1.42
VPS29-212ENST00000621131 JPH3Q8WXH2 748 aaPredicted RBP6.21□□□□□ -1.42
VPS29-212ENST00000621131 PUS7Q96PZ0 661 aaKnown RBP6.21□□□□□ -1.42
VPS29-212ENST00000621131 P2RX7Q99572 595 aaKnown RBP6.21□□□□□ -1.42
VPS29-212ENST00000621131 SHOC2Q9UQ13 582 aa6.21□□□□□ -1.42
VPS29-212ENST00000621131 MRPS17Q9Y2R5 130 aaKnown RBP6.21□□□□□ -1.42
VPS29-212ENST00000621131 NEURL4Q96JN8 1562 aa6.21□□□□□ -1.42
VPS29-212ENST00000621131 RALGAPBQ86X10 1494 aa6.21□□□□□ -1.42
VPS29-212ENST00000621131 E2F8A0AVK6 867 aa6.2□□□□□ -1.42
VPS29-212ENST00000621131 UBXN7O94888 489 aa6.2□□□□□ -1.42
VPS29-212ENST00000621131 CSF1RP07333 972 aa6.2□□□□□ -1.42
VPS29-212ENST00000621131 CT47B1P0C2W7 299 aaPredicted RBP6.2□□□□□ -1.42
VPS29-212ENST00000621131 CYP2C9P11712 490 aa6.2□□□□□ -1.42
VPS29-212ENST00000621131 ENGP17813 658 aa6.2□□□□□ -1.42
VPS29-212ENST00000621131 HTR1BP28222 390 aa6.2□□□□□ -1.42
VPS29-212ENST00000621131 LRPAP1P30533 357 aa6.2□□□□□ -1.42
VPS29-212ENST00000621131 RAB27AP51159 221 aa6.2□□□□□ -1.42
VPS29-212ENST00000621131 EZH2Q15910 746 aaKnown RBP6.2□□□□□ -1.42
VPS29-212ENST00000621131 ZIK1Q3SY52 487 aaPredicted RBP6.2□□□□□ -1.42
VPS29-212ENST00000621131 ZNF804AQ7Z570 1209 aa6.2□□□□□ -1.42
VPS29-212ENST00000621131 DENND1CQ8IV53 801 aa6.2□□□□□ -1.42
VPS29-212ENST00000621131 TPH2Q8IWU9 490 aa6.2□□□□□ -1.42
VPS29-212ENST00000621131 RP9Q8TA86 221 aaKnown RBP6.2□□□□□ -1.42
VPS29-212ENST00000621131 PPP1R35Q8TAP8 253 aa6.2□□□□□ -1.42
VPS29-212ENST00000621131 CAMKK2Q96RR4 588 aa6.2□□□□□ -1.42
VPS29-212ENST00000621131 FSD1LQ9BXM9 530 aa6.2□□□□□ -1.42
VPS29-212ENST00000621131 SEMA4CQ9C0C4 833 aa6.2□□□□□ -1.42
VPS29-212ENST00000621131 GLOD4Q9HC38 313 aa6.2□□□□□ -1.42
VPS29-212ENST00000621131 CNNM1Q9NRU3 951 aa6.2□□□□□ -1.42
VPS29-212ENST00000621131 PIH1D1Q9NWS0 290 aaKnown RBP6.2□□□□□ -1.42
VPS29-212ENST00000621131 ZNF180Q9UJW8 692 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms