RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 NUP93Q8N1F7 819 aa12.68□□□□□ -0.38
UPF3B-204ENST00000619445 C12orf50Q8NA57 414 aaPredicted RBP12.68□□□□□ -0.38
UPF3B-204ENST00000619445 TTC16Q8NEE8 873 aa12.68□□□□□ -0.38
UPF3B-204ENST00000619445 PARD3BQ8TEW8 1205 aa12.68□□□□□ -0.38
UPF3B-204ENST00000619445 CHFRQ96EP1 664 aa12.68□□□□□ -0.38
UPF3B-204ENST00000619445 CCDC34Q96HJ3 373 aa12.68□□□□□ -0.38
UPF3B-204ENST00000619445 FAM84AQ96KN4 292 aa12.68□□□□□ -0.38
UPF3B-204ENST00000619445 SLC22A12Q96S37 553 aa12.68□□□□□ -0.38
UPF3B-204ENST00000619445 MRPL45Q9BRJ2 306 aaKnown RBP12.68□□□□□ -0.38
UPF3B-204ENST00000619445 XYLT2Q9H1B5 865 aa12.68□□□□□ -0.38
UPF3B-204ENST00000619445 BLZF1Q9H2G9 400 aa12.68□□□□□ -0.38
UPF3B-204ENST00000619445 NXF1Q9UBU9 619 aaKnown RBP12.68□□□□□ -0.38
UPF3B-204ENST00000619445 MYH10P35580 1976 aa12.67□□□□□ -0.38
UPF3B-204ENST00000619445 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.67□□□□□ -0.38
UPF3B-204ENST00000619445 LEFTY2O00292 366 aa12.67□□□□□ -0.38
UPF3B-204ENST00000619445 IKBKBO14920 756 aa12.67□□□□□ -0.38
UPF3B-204ENST00000619445 RHOBTB1O94844 696 aa12.67□□□□□ -0.38
UPF3B-204ENST00000619445 CLSTN1O94985 981 aa12.67□□□□□ -0.38
UPF3B-204ENST00000619445 EPN2O95208 641 aa12.67□□□□□ -0.38
UPF3B-204ENST00000619445 ADH1CP00326 375 aa12.67□□□□□ -0.38
UPF3B-204ENST00000619445 OAS1P00973 400 aaKnown RBP12.67□□□□□ -0.38
UPF3B-204ENST00000619445 ZNF806P0C7X5 589 aa12.67□□□□□ -0.38
UPF3B-204ENST00000619445 RAP1GAPP47736 663 aa12.67□□□□□ -0.38
UPF3B-204ENST00000619445 TUBP50607 506 aa12.67□□□□□ -0.38
UPF3B-204ENST00000619445 LIMK1P53667 647 aa12.67□□□□□ -0.38
UPF3B-204ENST00000619445 MYL6P60660 151 aa12.67□□□□□ -0.38
UPF3B-204ENST00000619445 TAF10Q12962 218 aa12.67□□□□□ -0.38
UPF3B-204ENST00000619445 CUL4BQ13620 913 aa12.67□□□□□ -0.38
UPF3B-204ENST00000619445 NCOA4Q13772 614 aa12.67□□□□□ -0.38
UPF3B-204ENST00000619445 CCDC142Q17RM4 750 aa12.67□□□□□ -0.38
UPF3B-204ENST00000619445 SGSM1Q2NKQ1 1148 aa12.67□□□□□ -0.38
UPF3B-204ENST00000619445 SCARA3Q6AZY7 606 aa12.67□□□□□ -0.38
UPF3B-204ENST00000619445 NUDT18Q6ZVK8 323 aa12.67□□□□□ -0.38
UPF3B-204ENST00000619445 RPLP0P6Q8NHW5 317 aa12.67□□□□□ -0.38
UPF3B-204ENST00000619445 RIN3Q8TB24 985 aa12.67□□□□□ -0.38
UPF3B-204ENST00000619445 TMC2Q8TDI7 906 aa12.67□□□□□ -0.38
UPF3B-204ENST00000619445 SMARCD1Q96GM5 515 aa12.67□□□□□ -0.38
UPF3B-204ENST00000619445 DUSP9Q99956 384 aaKnown RBP12.67□□□□□ -0.38
UPF3B-204ENST00000619445 DMAP1Q9NPF5 467 aaPredicted RBP12.67□□□□□ -0.38
UPF3B-204ENST00000619445 FRMD4BQ9Y2L6 1034 aa12.67□□□□□ -0.38
UPF3B-204ENST00000619445 ATP6V1DQ9Y5K8 247 aa12.67□□□□□ -0.38
UPF3B-204ENST00000619445 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.66□□□□□ -0.38
UPF3B-204ENST00000619445 E2F8A0AVK6 867 aa12.66□□□□□ -0.38
UPF3B-204ENST00000619445 MAPK13O15264 365 aa12.66□□□□□ -0.38
UPF3B-204ENST00000619445 CALUO43852 315 aaPredicted RBP12.66□□□□□ -0.38
UPF3B-204ENST00000619445 ABL1P00519 1130 aa12.66□□□□□ -0.38
UPF3B-204ENST00000619445 CMA1P23946 247 aa12.66□□□□□ -0.38
UPF3B-204ENST00000619445 USP46P62068 366 aa12.66□□□□□ -0.38
UPF3B-204ENST00000619445 MRPS21P82921 87 aaKnown RBP12.66□□□□□ -0.38
UPF3B-204ENST00000619445 ENPEPQ07075 957 aa12.66□□□□□ -0.38
UPF3B-204ENST00000619445 SRSF5Q13243 272 aaKnown RBP12.66□□□□□ -0.38
UPF3B-204ENST00000619445 DMC1Q14565 340 aa12.66□□□□□ -0.38
UPF3B-204ENST00000619445 FOXD4L5Q5VV16 416 aaPredicted RBP12.66□□□□□ -0.38
UPF3B-204ENST00000619445 SNX30Q5VWJ9 437 aa12.66□□□□□ -0.38
UPF3B-204ENST00000619445 IL31Q6EBC2 164 aa12.66□□□□□ -0.38
UPF3B-204ENST00000619445 PKN3Q6P5Z2 889 aa12.66□□□□□ -0.38
UPF3B-204ENST00000619445 UNC93AQ86WB7 457 aa12.66□□□□□ -0.38
UPF3B-204ENST00000619445 FOXD4L4Q8WXT5 416 aaPredicted RBP12.66□□□□□ -0.38
UPF3B-204ENST00000619445 ZNF516Q92618 1163 aa12.66□□□□□ -0.38
UPF3B-204ENST00000619445 FBXO32Q969P5 355 aa12.66□□□□□ -0.38
UPF3B-204ENST00000619445 IMPG2Q9BZV3 1241 aa12.66□□□□□ -0.38
UPF3B-204ENST00000619445 FBXO44Q9H4M3 255 aa12.66□□□□□ -0.38
UPF3B-204ENST00000619445 VPS45Q9NRW7 570 aa12.66□□□□□ -0.38
UPF3B-204ENST00000619445 DMAC2Q9NW81 257 aa12.66□□□□□ -0.38
UPF3B-204ENST00000619445 C2orf42Q9NWW7 574 aa12.66□□□□□ -0.38
UPF3B-204ENST00000619445 CPQQ9Y646 472 aa12.66□□□□□ -0.38
UPF3B-204ENST00000619445 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.66□□□□□ -0.38
UPF3B-204ENST00000619445 CACNA1BQ00975 2339 aa12.66□□□□□ -0.38
UPF3B-204ENST00000619445 MYO16Q9Y6X6 1858 aa12.66□□□□□ -0.38
UPF3B-204ENST00000619445 KIAA1549LQ6ZVL6 1849 aa12.65□□□□□ -0.38
UPF3B-204ENST00000619445 EML5Q05BV3 1969 aa12.65□□□□□ -0.38
UPF3B-204ENST00000619445 ACTN4O43707 911 aaKnown RBP12.65□□□□□ -0.38
UPF3B-204ENST00000619445 ALDH1A2O94788 518 aa12.65□□□□□ -0.38
UPF3B-204ENST00000619445 MBL2P11226 248 aaPredicted RBP12.65□□□□□ -0.38
UPF3B-204ENST00000619445 DGKEP52429 567 aa12.65□□□□□ -0.38
UPF3B-204ENST00000619445 KRT85P78386 507 aa12.65□□□□□ -0.38
UPF3B-204ENST00000619445 DNM1Q05193 864 aaKnown RBP12.65□□□□□ -0.38
UPF3B-204ENST00000619445 FOXD4L6Q3SYB3 417 aaPredicted RBP12.65□□□□□ -0.38
UPF3B-204ENST00000619445 AASDHQ4L235 1098 aaPredicted RBP12.65□□□□□ -0.38
UPF3B-204ENST00000619445 USP39Q53GS9 565 aaKnown RBP12.65□□□□□ -0.38
UPF3B-204ENST00000619445 HECTD3Q5T447 861 aa12.65□□□□□ -0.38
UPF3B-204ENST00000619445 FOXD4L3Q6VB84 417 aaPredicted RBP12.65□□□□□ -0.38
UPF3B-204ENST00000619445 ADGRG2Q8IZP9 1017 aa12.65□□□□□ -0.38
UPF3B-204ENST00000619445 TSTD1Q8NFU3 115 aa12.65□□□□□ -0.38
UPF3B-204ENST00000619445 KCNV2Q8TDN2 545 aa12.65□□□□□ -0.38
UPF3B-204ENST00000619445 PAGE5Q96GU1 130 aa12.65□□□□□ -0.38
UPF3B-204ENST00000619445 MED10Q9BTT4 135 aa12.65□□□□□ -0.38
UPF3B-204ENST00000619445 B3GNT5Q9BYG0 378 aa12.65□□□□□ -0.38
UPF3B-204ENST00000619445 ZNF518BQ9C0D4 1074 aa12.65□□□□□ -0.38
UPF3B-204ENST00000619445 GZF1Q9H116 711 aaPredicted RBP12.65□□□□□ -0.38
UPF3B-204ENST00000619445 LINC00597Q9H2U6 94 aa12.65□□□□□ -0.38
UPF3B-204ENST00000619445 FBRSL1Q9HCM7 1045 aaKnown RBP12.65□□□□□ -0.38
UPF3B-204ENST00000619445 SERTAD1Q9UHV2 236 aa12.65□□□□□ -0.38
UPF3B-204ENST00000619445 LRRIQ3A6PVS8 624 aaPredicted RBP12.64□□□□□ -0.39
UPF3B-204ENST00000619445 KLRC4O43908 158 aa12.64□□□□□ -0.39
UPF3B-204ENST00000619445 C4BPAP04003 597 aaKnown RBP12.64□□□□□ -0.39
UPF3B-204ENST00000619445 NR3C1P04150 777 aa12.64□□□□□ -0.39
UPF3B-204ENST00000619445 APODP05090 189 aa12.64□□□□□ -0.39
UPF3B-204ENST00000619445 CYP17A1P05093 508 aa12.64□□□□□ -0.39
UPF3B-204ENST00000619445 RPL13P26373 211 aaKnown RBP12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms