RNA–Protein interactions for RNA: ENST00000614496.4

MSH6-213, Transcript of mutS homolog 6, humanhuman

TSL 1 (best) BASIC

Gene MSH6, Length 4,150 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-213ENST00000614496 FAM49AQ9H0Q0 323 aaPredicted RBP13.06□□□□□ -0.32
MSH6-213ENST00000614496 CSADQ9Y600 493 aa13.06□□□□□ -0.32
MSH6-213ENST00000614496 LYPLA2O95372 231 aa13.06□□□□□ -0.32
MSH6-213ENST00000614496 C4BPAP04003 597 aaKnown RBP13.06□□□□□ -0.32
MSH6-213ENST00000614496 CD48P09326 243 aa13.06□□□□□ -0.32
MSH6-213ENST00000614496 CXCL9Q07325 125 aa13.06□□□□□ -0.32
MSH6-213ENST00000614496 KCTD2Q14681 263 aa13.06□□□□□ -0.32
MSH6-213ENST00000614496 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.06□□□□□ -0.32
MSH6-213ENST00000614496 RFWD3Q6PCD5 774 aa13.06□□□□□ -0.32
MSH6-213ENST00000614496 ALYREFQ86V81 257 aaKnown RBP13.06□□□□□ -0.32
MSH6-213ENST00000614496 SCUBE1Q8IWY4 988 aa13.06□□□□□ -0.32
MSH6-213ENST00000614496 SPATA33Q96N06 139 aa13.06□□□□□ -0.32
MSH6-213ENST00000614496 DDX50Q9BQ39 737 aaKnown RBP13.06□□□□□ -0.32
MSH6-213ENST00000614496 XPNPEP1Q9NQW7 623 aa13.06□□□□□ -0.32
MSH6-213ENST00000614496 INPP5FQ9Y2H2 1132 aa13.06□□□□□ -0.32
MSH6-213ENST00000614496 SNX9Q9Y5X1 595 aa13.06□□□□□ -0.32
MSH6-213ENST00000614496 ARAP2Q8WZ64 1704 aa13.06□□□□□ -0.32
MSH6-213ENST00000614496 STRCP1A6NGW2 1772 aa13.06□□□□□ -0.32
MSH6-213ENST00000614496 STIP1P31948 543 aaKnown RBP13.06□□□□□ -0.32
MSH6-213ENST00000614496 PTGER2P43116 358 aa13.06□□□□□ -0.32
MSH6-213ENST00000614496 CCNHP51946 323 aaPredicted RBP13.06□□□□□ -0.32
MSH6-213ENST00000614496 GDF10P55107 478 aa13.06□□□□□ -0.32
MSH6-213ENST00000614496 RPL10AP62906 217 aaKnown RBP13.06□□□□□ -0.32
MSH6-213ENST00000614496 LRRC74BQ6ZQY2 392 aa13.06□□□□□ -0.32
MSH6-213ENST00000614496 MICALL2Q8IY33 904 aa13.06□□□□□ -0.32
MSH6-213ENST00000614496 ST13P4Q8IZP2 240 aaPredicted RBP13.06□□□□□ -0.32
MSH6-213ENST00000614496 CEP120Q8N960 986 aa13.06□□□□□ -0.32
MSH6-213ENST00000614496 CEP41Q9BYV8 373 aa13.06□□□□□ -0.32
MSH6-213ENST00000614496 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.06□□□□□ -0.32
MSH6-213ENST00000614496 CDK16Q00536 496 aa13.06□□□□□ -0.32
MSH6-213ENST00000614496 C16orf46Q6P387 395 aa13.06□□□□□ -0.32
MSH6-213ENST00000614496 IZUMO2Q6UXV1 221 aa13.06□□□□□ -0.32
MSH6-213ENST00000614496 SH3GL3Q99963 347 aa13.06□□□□□ -0.32
MSH6-213ENST00000614496 ZMYND8Q9ULU4 1186 aaPredicted RBP13.06□□□□□ -0.32
MSH6-213ENST00000614496 DRG1Q9Y295 367 aaKnown RBP13.06□□□□□ -0.32
MSH6-213ENST00000614496 PDGFRBP09619 1106 aa13.05□□□□□ -0.32
MSH6-213ENST00000614496 ARL1P40616 181 aaPredicted RBP13.05□□□□□ -0.32
MSH6-213ENST00000614496 SKIV2L2P42285 1042 aaKnown RBP13.05□□□□□ -0.32
MSH6-213ENST00000614496 TRIP10Q15642 601 aa13.05□□□□□ -0.32
MSH6-213ENST00000614496 KHDC1Q4VXA5 237 aaKnown RBP13.05□□□□□ -0.32
MSH6-213ENST00000614496 KIF12Q96FN5 646 aa13.05□□□□□ -0.32
MSH6-213ENST00000614496 APOPT1Q96IL0 206 aa13.05□□□□□ -0.32
MSH6-213ENST00000614496 EBF2Q9HAK2 575 aa13.05□□□□□ -0.32
MSH6-213ENST00000614496 KLHL8Q9P2G9 620 aaPredicted RBP13.05□□□□□ -0.32
MSH6-213ENST00000614496 C2CD2LO14523 706 aa13.05□□□□□ -0.32
MSH6-213ENST00000614496 LSM8O95777 96 aaKnown RBP13.05□□□□□ -0.32
MSH6-213ENST00000614496 CYP1A1P04798 512 aaPredicted RBP13.05□□□□□ -0.32
MSH6-213ENST00000614496 SLC34A1Q06495 639 aa13.05□□□□□ -0.32
MSH6-213ENST00000614496 AMHR2Q16671 573 aa13.05□□□□□ -0.32
MSH6-213ENST00000614496 CPT1BQ92523 772 aa13.05□□□□□ -0.32
MSH6-213ENST00000614496 PGBD4Q96DM1 585 aa13.05□□□□□ -0.32
MSH6-213ENST00000614496 ST6GALNAC4Q9H4F1 302 aa13.05□□□□□ -0.32
MSH6-213ENST00000614496 ACSS3Q9H6R3 686 aa13.05□□□□□ -0.32
MSH6-213ENST00000614496 PEX10O60683 326 aa13.05□□□□□ -0.32
MSH6-213ENST00000614496 NPM3O75607 178 aaKnown RBP13.05□□□□□ -0.32
MSH6-213ENST00000614496 ATP4AP20648 1035 aa13.05□□□□□ -0.32
MSH6-213ENST00000614496 RBL1P28749 1068 aa13.05□□□□□ -0.32
MSH6-213ENST00000614496 BACE1P56817 501 aa13.05□□□□□ -0.32
MSH6-213ENST00000614496 TAF5Q15542 800 aa13.05□□□□□ -0.32
MSH6-213ENST00000614496 PARP6Q2NL67 630 aa13.05□□□□□ -0.32
MSH6-213ENST00000614496 NBPF20Q3BBV1 942 aa13.05□□□□□ -0.32
MSH6-213ENST00000614496 RNASEH2BQ5TBB1 312 aaKnown RBP13.05□□□□□ -0.32
MSH6-213ENST00000614496 RHBDF2Q6PJF5 856 aa13.05□□□□□ -0.32
MSH6-213ENST00000614496 DSTYKQ6XUX3 929 aa13.05□□□□□ -0.32
MSH6-213ENST00000614496 TTC7BQ86TV6 843 aa13.05□□□□□ -0.32
MSH6-213ENST00000614496 WDR49Q8IV35 697 aa13.05□□□□□ -0.32
MSH6-213ENST00000614496 DCLK2Q8N568 766 aa13.05□□□□□ -0.32
MSH6-213ENST00000614496 L3MBTL3Q96JM7 780 aaPredicted RBP13.05□□□□□ -0.32
MSH6-213ENST00000614496 DNAJC16Q9Y2G8 782 aa13.05□□□□□ -0.32
MSH6-213ENST00000614496 ATP9BO43861 1147 aa13.04□□□□□ -0.32
MSH6-213ENST00000614496 ITGAVP06756 1048 aa13.04□□□□□ -0.32
MSH6-213ENST00000614496 GJB1P08034 283 aa13.04□□□□□ -0.32
MSH6-213ENST00000614496 IVDP26440 423 aa13.04□□□□□ -0.32
MSH6-213ENST00000614496 CACNA2D1P54289 1103 aa13.04□□□□□ -0.32
MSH6-213ENST00000614496 PTPN11Q06124 597 aaPredicted RBP13.04□□□□□ -0.32
MSH6-213ENST00000614496 FAM47CQ5HY64 1035 aa13.04□□□□□ -0.32
MSH6-213ENST00000614496 XRRA1Q6P2D8 792 aa13.04□□□□□ -0.32
MSH6-213ENST00000614496 CDKL3Q8IVW4 592 aaPredicted RBP13.04□□□□□ -0.32
MSH6-213ENST00000614496 BRSK2Q8IWQ3 736 aa13.04□□□□□ -0.32
MSH6-213ENST00000614496 HPDLQ96IR7 371 aa13.04□□□□□ -0.32
MSH6-213ENST00000614496 FAM167AQ96KS9 214 aa13.04□□□□□ -0.32
MSH6-213ENST00000614496 C2orf40Q9H1Z8 148 aa13.04□□□□□ -0.32
MSH6-213ENST00000614496 SAR1AQ9NR31 198 aa13.04□□□□□ -0.32
MSH6-213ENST00000614496 TJP2Q9UDY2 1190 aa13.04□□□□□ -0.32
MSH6-213ENST00000614496 TCRBV9S1A1TA0A576 114 aa13.04□□□□□ -0.32
MSH6-213ENST00000614496 PSMG1O95456 288 aa13.04□□□□□ -0.32
MSH6-213ENST00000614496 VNN1O95497 513 aa13.04□□□□□ -0.32
MSH6-213ENST00000614496 KCNA4P22459 653 aa13.04□□□□□ -0.32
MSH6-213ENST00000614496 PID1Q7Z2X4 250 aa13.04□□□□□ -0.32
MSH6-213ENST00000614496 NETO2Q8NC67 525 aa13.04□□□□□ -0.32
MSH6-213ENST00000614496 SLCO2A1Q92959 643 aa13.04□□□□□ -0.32
MSH6-213ENST00000614496 PAPOLBQ9NRJ5 636 aaKnown RBP13.04□□□□□ -0.32
MSH6-213ENST00000614496 RNF19AQ9NV58 838 aa13.04□□□□□ -0.32
MSH6-213ENST00000614496 PRPF4O43172 522 aaKnown RBP eCLIP13.04□□□□□ -0.321e-7■■■■■ 27.4
MSH6-213ENST00000614496 ADCY3O60266 1144 aa13.04□□□□□ -0.32
MSH6-213ENST00000614496 CDKN2BP42772 138 aa13.04□□□□□ -0.32
MSH6-213ENST00000614496 FKBP1AP62942 108 aaKnown RBP13.04□□□□□ -0.32
MSH6-213ENST00000614496 BST1Q10588 318 aa13.04□□□□□ -0.32
MSH6-213ENST00000614496 NME3Q13232 169 aa13.04□□□□□ -0.32
MSH6-213ENST00000614496 PTPN20Q4JDL3 420 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms