RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 TMEM150AQ86TG1 271 aa20.47■□□□□ 0.87
UPF1-212ENST00000601689 SLC4A11Q8NBS3 891 aa20.47■□□□□ 0.87
UPF1-212ENST00000601689 MSANTD3Q96H12 275 aa20.47■□□□□ 0.87
UPF1-212ENST00000601689 NELL2Q99435 816 aa20.47■□□□□ 0.87
UPF1-212ENST00000601689 TUBGCP2Q9BSJ2 902 aa20.47■□□□□ 0.87
UPF1-212ENST00000601689 NACA2Q9H009 215 aa20.47■□□□□ 0.87
UPF1-212ENST00000601689 INTS2Q9H0H0 1204 aaKnown RBP20.47■□□□□ 0.87
UPF1-212ENST00000601689 KCNH6Q9H252 994 aa20.47■□□□□ 0.87
UPF1-212ENST00000601689 TLR8Q9NR97 1041 aaKnown RBP20.47■□□□□ 0.87
UPF1-212ENST00000601689 NFE2L3Q9Y4A8 694 aa20.47■□□□□ 0.87
UPF1-212ENST00000601689 KCNJ18B7U540 433 aa20.46■□□□□ 0.87
UPF1-212ENST00000601689 MAN2B1O00754 1011 aa20.46■□□□□ 0.87
UPF1-212ENST00000601689 NCAM2O15394 837 aa20.46■□□□□ 0.87
UPF1-212ENST00000601689 COL9A1P20849 921 aa20.46■□□□□ 0.87
UPF1-212ENST00000601689 NUBP1P53384 320 aa20.46■□□□□ 0.87
UPF1-212ENST00000601689 CACNA2D1P54289 1103 aa20.46■□□□□ 0.87
UPF1-212ENST00000601689 USP46P62068 366 aa20.46■□□□□ 0.87
UPF1-212ENST00000601689 AMPD2Q01433 879 aa20.46■□□□□ 0.87
UPF1-212ENST00000601689 FCHO2Q0JRZ9 810 aa20.46■□□□□ 0.87
UPF1-212ENST00000601689 KCNJ12Q14500 433 aa20.46■□□□□ 0.87
UPF1-212ENST00000601689 VWA3BQ502W6 1294 aa20.46■□□□□ 0.87
UPF1-212ENST00000601689 PHLDB3Q6NSJ2 640 aa20.46■□□□□ 0.87
UPF1-212ENST00000601689 CLEC20AQ6ZU45 233 aa20.46■□□□□ 0.87
UPF1-212ENST00000601689 SMOQ99835 787 aa20.46■□□□□ 0.87
UPF1-212ENST00000601689 UBE2TQ9NPD8 197 aaPredicted RBP20.46■□□□□ 0.87
UPF1-212ENST00000601689 TRIOO75962 3097 aa20.46■□□□□ 0.87
UPF1-212ENST00000601689 ZNF840PA6NDX5 716 aa20.45■□□□□ 0.86
UPF1-212ENST00000601689 NRG2O14511 850 aaPredicted RBP20.45■□□□□ 0.86
UPF1-212ENST00000601689 GLULP15104 373 aa20.45■□□□□ 0.86
UPF1-212ENST00000601689 BCAT1P54687 386 aa20.45■□□□□ 0.86
UPF1-212ENST00000601689 POTEHQ6S545 545 aa20.45■□□□□ 0.86
UPF1-212ENST00000601689 ZNF852Q6ZMS4 543 aa20.45■□□□□ 0.86
UPF1-212ENST00000601689 RRAGAQ7L523 313 aa20.45■□□□□ 0.86
UPF1-212ENST00000601689 TADA2BQ86TJ2 420 aa20.45■□□□□ 0.86
UPF1-212ENST00000601689 DDX42Q86XP3 938 aaKnown RBP eCLIP20.45■□□□□ 0.86
UPF1-212ENST00000601689 GPIHBP1Q8IV16 184 aa20.45■□□□□ 0.86
UPF1-212ENST00000601689 ARL14EPQ8N8R7 260 aaPredicted RBP20.45■□□□□ 0.86
UPF1-212ENST00000601689 ANKRD52Q8NB46 1076 aa20.45■□□□□ 0.86
UPF1-212ENST00000601689 TTC16Q8NEE8 873 aa20.45■□□□□ 0.86
UPF1-212ENST00000601689 LMO3Q8TAP4 145 aa20.45■□□□□ 0.86
UPF1-212ENST00000601689 EXOC4Q96A65 974 aa20.45■□□□□ 0.86
UPF1-212ENST00000601689 UBXN6Q9BZV1 441 aa20.45■□□□□ 0.86
UPF1-212ENST00000601689 NDST4Q9H3R1 872 aa20.45■□□□□ 0.86
UPF1-212ENST00000601689 TBC1D17Q9HA65 648 aa20.45■□□□□ 0.86
UPF1-212ENST00000601689 NCANO14594 1321 aa20.45■□□□□ 0.86
UPF1-212ENST00000601689 TNFRSF10BO14763 440 aa20.44■□□□□ 0.86
UPF1-212ENST00000601689 TADA3O75528 432 aa20.44■□□□□ 0.86
UPF1-212ENST00000601689 KRT5P13647 590 aa20.44■□□□□ 0.86
UPF1-212ENST00000601689 CDK11BP21127 795 aaKnown RBP20.44■□□□□ 0.86
UPF1-212ENST00000601689 ACO1P21399 889 aaKnown RBP20.44■□□□□ 0.86
UPF1-212ENST00000601689 AVPR2P30518 371 aa20.44■□□□□ 0.86
UPF1-212ENST00000601689 PSEN1P49768 467 aa20.44■□□□□ 0.86
UPF1-212ENST00000601689 KPNA1P52294 538 aaPredicted RBP20.44■□□□□ 0.86
UPF1-212ENST00000601689 STARD6P59095 220 aa20.44■□□□□ 0.86
UPF1-212ENST00000601689 HECTD3Q5T447 861 aa20.44■□□□□ 0.86
UPF1-212ENST00000601689 SMYD5Q6GMV2 418 aa20.44■□□□□ 0.86
UPF1-212ENST00000601689 CAVIN1Q6NZI2 390 aaKnown RBP20.44■□□□□ 0.86
UPF1-212ENST00000601689 TRIM65Q6PJ69 517 aa20.44■□□□□ 0.86
UPF1-212ENST00000601689 IRF2BP1Q8IU81 584 aa20.44■□□□□ 0.86
UPF1-212ENST00000601689 SCAMP5Q8TAC9 235 aa20.44■□□□□ 0.86
UPF1-212ENST00000601689 USP13Q92995 863 aaPredicted RBP20.44■□□□□ 0.86
UPF1-212ENST00000601689 MED15Q96RN5 788 aa20.44■□□□□ 0.86
UPF1-212ENST00000601689 CRACR2AQ9BSW2 395 aa20.44■□□□□ 0.86
UPF1-212ENST00000601689 C8orf33Q9H7E9 229 aaPredicted RBP20.44■□□□□ 0.86
UPF1-212ENST00000601689 CHORDC1Q9UHD1 332 aaPredicted RBP20.44■□□□□ 0.86
UPF1-212ENST00000601689 SIT1Q9Y3P8 196 aa20.44■□□□□ 0.86
UPF1-212ENST00000601689 KRBA1A5PL33 1030 aa20.43■□□□□ 0.86
UPF1-212ENST00000601689 MED7O43513 233 aa20.43■□□□□ 0.86
UPF1-212ENST00000601689 BEST1O76090 585 aa20.43■□□□□ 0.86
UPF1-212ENST00000601689 PRAMEF12O95522 483 aa20.43■□□□□ 0.86
UPF1-212ENST00000601689 PDGFBP01127 241 aaPredicted RBP20.43■□□□□ 0.86
UPF1-212ENST00000601689 MBL2P11226 248 aaPredicted RBP20.43■□□□□ 0.86
UPF1-212ENST00000601689 AOC1P19801 751 aa20.43■□□□□ 0.86
UPF1-212ENST00000601689 TUBP50607 506 aa20.43■□□□□ 0.86
UPF1-212ENST00000601689 MLLT6P55198 1093 aaPredicted RBP20.43■□□□□ 0.86
UPF1-212ENST00000601689 GOLGA8FQ08AF8 430 aa20.43■□□□□ 0.86
UPF1-212ENST00000601689 GOLGA8DPQ0D2H9 430 aa20.43■□□□□ 0.86
UPF1-212ENST00000601689 BST2Q10589 180 aaKnown RBP20.43■□□□□ 0.86
UPF1-212ENST00000601689 HSP90AA4PQ58FG1 418 aa20.43■□□□□ 0.86
UPF1-212ENST00000601689 TCP11X2Q5H9J9 407 aa20.43■□□□□ 0.86
UPF1-212ENST00000601689 TPRG1Q6ZUI0 275 aa20.43■□□□□ 0.86
UPF1-212ENST00000601689 ARHGAP18Q8N392 663 aa20.43■□□□□ 0.86
UPF1-212ENST00000601689 ZMIZ2Q8NF64 920 aa20.43■□□□□ 0.86
UPF1-212ENST00000601689 CDK5RAP1Q96SZ6 601 aaKnown RBP20.43■□□□□ 0.86
UPF1-212ENST00000601689 SMG9Q9H0W8 520 aaKnown RBP20.43■□□□□ 0.86
UPF1-212ENST00000601689 IRF2BPLQ9H1B7 796 aa20.43■□□□□ 0.86
UPF1-212ENST00000601689 LRRC4Q9HBW1 653 aa20.43■□□□□ 0.86
UPF1-212ENST00000601689 HEBP1Q9NRV9 189 aa20.43■□□□□ 0.86
UPF1-212ENST00000601689 TMEM30AQ9NV96 361 aa20.43■□□□□ 0.86
UPF1-212ENST00000601689 IL37Q9NZH6 218 aa20.43■□□□□ 0.86
UPF1-212ENST00000601689 APEX2Q9UBZ4 518 aa20.43■□□□□ 0.86
UPF1-212ENST00000601689 TSPAN16Q9UKR8 245 aa20.43■□□□□ 0.86
UPF1-212ENST00000601689 ARHGAP26Q9UNA1 814 aa20.43■□□□□ 0.86
UPF1-212ENST00000601689 MYO16Q9Y6X6 1858 aa20.42■□□□□ 0.86
UPF1-212ENST00000601689 KANSL1LA0AUZ9 987 aa20.42■□□□□ 0.86
UPF1-212ENST00000601689 C2orf78A6NCI8 922 aa20.42■□□□□ 0.86
UPF1-212ENST00000601689 RALAP11233 206 aa20.42■□□□□ 0.86
UPF1-212ENST00000601689 IFNAR2P48551 515 aa20.42■□□□□ 0.86
UPF1-212ENST00000601689 MYL5Q02045 173 aa20.42■□□□□ 0.86
UPF1-212ENST00000601689 NR1H3Q13133 447 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms