RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 C2orf78A6NCI8 922 aa17.82■□□□□ 0.44
TRIM28-215ENST00000601150 ZNF840PA6NDX5 716 aa17.82■□□□□ 0.44
TRIM28-215ENST00000601150 ZNF263O14978 683 aa17.82■□□□□ 0.44
TRIM28-215ENST00000601150 CKMP06732 381 aa17.82■□□□□ 0.44
TRIM28-215ENST00000601150 CD19P15391 556 aa17.82■□□□□ 0.44
TRIM28-215ENST00000601150 PFKLP17858 780 aa17.82■□□□□ 0.44
TRIM28-215ENST00000601150 PTMSP20962 102 aa17.82■□□□□ 0.44
TRIM28-215ENST00000601150 PDE6CP51160 858 aa17.82■□□□□ 0.44
TRIM28-215ENST00000601150 FCHO2Q0JRZ9 810 aa17.82■□□□□ 0.44
TRIM28-215ENST00000601150 ZNF268Q14587 947 aaPredicted RBP17.82■□□□□ 0.44
TRIM28-215ENST00000601150 EXOC3L4Q17RC7 722 aa17.82■□□□□ 0.44
TRIM28-215ENST00000601150 VWA3BQ502W6 1294 aa17.82■□□□□ 0.44
TRIM28-215ENST00000601150 SGO2Q562F6 1265 aa17.82■□□□□ 0.44
TRIM28-215ENST00000601150 TCP11X2Q5H9J9 407 aa17.82■□□□□ 0.44
TRIM28-215ENST00000601150 PHLDB3Q6NSJ2 640 aa17.82■□□□□ 0.44
TRIM28-215ENST00000601150 TRIM65Q6PJ69 517 aa17.82■□□□□ 0.44
TRIM28-215ENST00000601150 TMEM270Q6UE05 265 aa17.82■□□□□ 0.44
TRIM28-215ENST00000601150 BPIFB1Q8TDL5 484 aa17.82■□□□□ 0.44
TRIM28-215ENST00000601150 IRF7Q92985 503 aa17.82■□□□□ 0.44
TRIM28-215ENST00000601150 USP13Q92995 863 aaPredicted RBP17.82■□□□□ 0.44
TRIM28-215ENST00000601150 JAKMIP2Q96AA8 810 aa17.82■□□□□ 0.44
TRIM28-215ENST00000601150 KREMEN1Q96MU8 473 aa17.82■□□□□ 0.44
TRIM28-215ENST00000601150 NDST4Q9H3R1 872 aa17.82■□□□□ 0.44
TRIM28-215ENST00000601150 FBXO44Q9H4M3 255 aa17.82■□□□□ 0.44
TRIM28-215ENST00000601150 UBE2TQ9NPD8 197 aaPredicted RBP17.82■□□□□ 0.44
TRIM28-215ENST00000601150 FAM92AA1XBS5 289 aa17.81■□□□□ 0.44
TRIM28-215ENST00000601150 HHLA1C9JL84 531 aa17.81■□□□□ 0.44
TRIM28-215ENST00000601150 ABL1P00519 1130 aa17.81■□□□□ 0.44
TRIM28-215ENST00000601150 PAEPP09466 180 aa17.81■□□□□ 0.44
TRIM28-215ENST00000601150 VDRP11473 427 aa17.81■□□□□ 0.44
TRIM28-215ENST00000601150 HDCP19113 662 aa17.81■□□□□ 0.44
TRIM28-215ENST00000601150 SLC9A1P19634 815 aa17.81■□□□□ 0.44
TRIM28-215ENST00000601150 TYRO3Q06418 890 aa17.81■□□□□ 0.44
TRIM28-215ENST00000601150 ARHGAP29Q52LW3 1261 aa17.81■□□□□ 0.44
TRIM28-215ENST00000601150 SLC44A4Q53GD3 710 aa17.81■□□□□ 0.44
TRIM28-215ENST00000601150 MIIPQ5JXC2 388 aa17.81■□□□□ 0.44
TRIM28-215ENST00000601150 ENOSF1Q7L5Y1 443 aa17.81■□□□□ 0.44
TRIM28-215ENST00000601150 ARL14EPQ8N8R7 260 aaPredicted RBP17.81■□□□□ 0.44
TRIM28-215ENST00000601150 ANKRD52Q8NB46 1076 aa17.81■□□□□ 0.44
TRIM28-215ENST00000601150 RBBP8NLQ8NC74 664 aaPredicted RBP17.81■□□□□ 0.44
TRIM28-215ENST00000601150 FLCNQ8NFG4 579 aa17.81■□□□□ 0.44
TRIM28-215ENST00000601150 SHDQ96IW2 340 aa17.81■□□□□ 0.44
TRIM28-215ENST00000601150 FAM81BQ96LP2 452 aa17.81■□□□□ 0.44
TRIM28-215ENST00000601150 LRRC3BQ96PB8 259 aa17.81■□□□□ 0.44
TRIM28-215ENST00000601150 TRPV5Q9NQA5 729 aa17.81■□□□□ 0.44
TRIM28-215ENST00000601150 THG1LQ9NWX6 298 aaKnown RBP17.81■□□□□ 0.44
TRIM28-215ENST00000601150 CHADO15335 359 aa17.8■□□□□ 0.44
TRIM28-215ENST00000601150 RFX1P22670 979 aa17.8■□□□□ 0.44
TRIM28-215ENST00000601150 PON1P27169 355 aa17.8■□□□□ 0.44
TRIM28-215ENST00000601150 MFAP3P55082 362 aa17.8■□□□□ 0.44
TRIM28-215ENST00000601150 SLC8A3P57103 927 aa17.8■□□□□ 0.44
TRIM28-215ENST00000601150 MYL5Q02045 173 aa17.8■□□□□ 0.44
TRIM28-215ENST00000601150 PRKCQQ04759 706 aa17.8■□□□□ 0.44
TRIM28-215ENST00000601150 MLF2Q15773 248 aaPredicted RBP17.8■□□□□ 0.44
TRIM28-215ENST00000601150 GOLGA7BQ2TAP0 167 aa17.8■□□□□ 0.44
TRIM28-215ENST00000601150 KLHL40Q2TBA0 621 aa17.8■□□□□ 0.44
TRIM28-215ENST00000601150 CDKAL1Q5VV42 579 aa17.8■□□□□ 0.44
TRIM28-215ENST00000601150 GPRIN1Q7Z2K8 1008 aa17.8■□□□□ 0.44
TRIM28-215ENST00000601150 SLC22A12Q96S37 553 aa17.8■□□□□ 0.44
TRIM28-215ENST00000601150 CYP2S1Q96SQ9 504 aa17.8■□□□□ 0.44
TRIM28-215ENST00000601150 CHORDC1Q9UHD1 332 aaPredicted RBP17.8■□□□□ 0.44
TRIM28-215ENST00000601150 CCL26Q9Y258 94 aa17.8■□□□□ 0.44
TRIM28-215ENST00000601150 MIA3Q5JRA6 1907 aa17.8■□□□□ 0.44
TRIM28-215ENST00000601150 RNF225M0QZC1 329 aaPredicted RBP17.79■□□□□ 0.44
TRIM28-215ENST00000601150 STK25O00506 426 aa17.79■□□□□ 0.44
TRIM28-215ENST00000601150 PES1O00541 588 aaKnown RBP17.79■□□□□ 0.44
TRIM28-215ENST00000601150 OAS1P00973 400 aaKnown RBP17.79■□□□□ 0.44
TRIM28-215ENST00000601150 CLCN5P51795 746 aa17.79■□□□□ 0.44
TRIM28-215ENST00000601150 ZNF132P52740 706 aa17.79■□□□□ 0.44
TRIM28-215ENST00000601150 STARD6P59095 220 aa17.79■□□□□ 0.44
TRIM28-215ENST00000601150 PLCB2Q00722 1185 aa17.79■□□□□ 0.44
TRIM28-215ENST00000601150 IER5LQ5T953 404 aa17.79■□□□□ 0.44
TRIM28-215ENST00000601150 SNX30Q5VWJ9 437 aa17.79■□□□□ 0.44
TRIM28-215ENST00000601150 ASTLQ6HA08 431 aaPredicted RBP17.79■□□□□ 0.44
TRIM28-215ENST00000601150 UBXN6Q9BZV1 441 aa17.79■□□□□ 0.44
TRIM28-215ENST00000601150 NAT10Q9H0A0 1025 aaKnown RBP17.79■□□□□ 0.44
TRIM28-215ENST00000601150 TBC1D17Q9HA65 648 aa17.79■□□□□ 0.44
TRIM28-215ENST00000601150 FANCLQ9NW38 375 aa17.79■□□□□ 0.44
TRIM28-215ENST00000601150 GMIPQ9P107 970 aa17.79■□□□□ 0.44
TRIM28-215ENST00000601150 HESX1Q9UBX0 185 aa17.79■□□□□ 0.44
TRIM28-215ENST00000601150 APEX2Q9UBZ4 518 aa17.79■□□□□ 0.44
TRIM28-215ENST00000601150 TSPAN16Q9UKR8 245 aa17.79■□□□□ 0.44
TRIM28-215ENST00000601150 ARHGAP26Q9UNA1 814 aa17.79■□□□□ 0.44
TRIM28-215ENST00000601150 CNTN6Q9UQ52 1028 aa17.79■□□□□ 0.44
TRIM28-215ENST00000601150 SCML2Q9UQR0 700 aa17.79■□□□□ 0.44
TRIM28-215ENST00000601150 ZNF318Q5VUA4 2279 aa17.79■□□□□ 0.44
TRIM28-215ENST00000601150 COL4A3Q01955 1670 aa17.78■□□□□ 0.44
TRIM28-215ENST00000601150 ARNTLO00327 626 aa17.78■□□□□ 0.44
TRIM28-215ENST00000601150 O00370 1275 aa17.78■□□□□ 0.44
TRIM28-215ENST00000601150 OLFM2O95897 454 aa17.78■□□□□ 0.44
TRIM28-215ENST00000601150 ZDHHC11BP0C7U3 371 aa17.78■□□□□ 0.44
TRIM28-215ENST00000601150 KRT5P13647 590 aa17.78■□□□□ 0.44
TRIM28-215ENST00000601150 BCAT1P54687 386 aa17.78■□□□□ 0.44
TRIM28-215ENST00000601150 VCPP55072 806 aaKnown RBP17.78■□□□□ 0.44
TRIM28-215ENST00000601150 STILQ15468 1287 aa17.78■□□□□ 0.44
TRIM28-215ENST00000601150 HECTD3Q5T447 861 aa17.78■□□□□ 0.44
TRIM28-215ENST00000601150 CWF19L1Q69YN2 538 aaKnown RBP17.78■□□□□ 0.44
TRIM28-215ENST00000601150 GJB7Q6PEY0 223 aa17.78■□□□□ 0.44
TRIM28-215ENST00000601150 LCLAT1Q6UWP7 414 aa17.78■□□□□ 0.44
TRIM28-215ENST00000601150 TTC30AQ86WT1 665 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms