RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 WARSP23381 471 aaKnown RBP6.53□□□□□ -1.36
VRK3-220ENST00000600259 ITPKAP23677 461 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 HOXD13P35453 343 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 TIE1P35590 1138 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 EIF2DP41214 584 aaKnown RBP6.53□□□□□ -1.36
VRK3-220ENST00000600259 TNFRSF4P43489 277 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 PSMC1P62191 440 aaKnown RBP6.53□□□□□ -1.36
VRK3-220ENST00000600259 NOP14P78316 857 aaKnown RBP6.53□□□□□ -1.36
VRK3-220ENST00000600259 RING1Q06587 406 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 KCNB1Q14721 858 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 UAP1L1Q3KQV9 507 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 C8orf34Q49A92 452 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 HSF5Q4G112 596 aaPredicted RBP6.53□□□□□ -1.36
VRK3-220ENST00000600259 LMBRD2Q68DH5 695 aaPredicted RBP6.53□□□□□ -1.36
VRK3-220ENST00000600259 DENND5BQ6ZUT9 1274 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 LPCAT2Q7L5N7 544 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 MIB1Q86YT6 1006 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 ETFBKMTQ8IXQ9 262 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 KRI1Q8N9T8 703 aaKnown RBP6.53□□□□□ -1.36
VRK3-220ENST00000600259 FSIP1Q8NA03 581 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 GLIS3Q8NEA6 775 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 TTC16Q8NEE8 873 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 MYCBPAPQ8TBZ2 947 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 WBP2Q969T9 261 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 MYLPFQ96A32 169 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 PCED1BQ96HM7 432 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 C8orf48Q96LL4 319 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 PNKPQ96T60 521 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 SYT15Q9BQS2 421 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 MRPL45Q9BRJ2 306 aaKnown RBP6.53□□□□□ -1.36
VRK3-220ENST00000600259 MTMR12Q9C0I1 747 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 GZF1Q9H116 711 aaPredicted RBP6.53□□□□□ -1.36
VRK3-220ENST00000600259 PCIF1Q9H4Z3 704 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 CAPN10Q9HC96 672 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 ZDHHC4Q9NPG8 344 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 FSCN3Q9NQT6 498 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 OLFML3Q9NRN5 406 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 RBAKQ9NYW8 714 aaPredicted RBP6.53□□□□□ -1.36
VRK3-220ENST00000600259 IL37Q9NZH6 218 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 TRPM5Q9NZQ8 1165 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 TBC1D7Q9P0N9 293 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 FBXO2Q9UK22 296 aaPredicted RBP6.53□□□□□ -1.36
VRK3-220ENST00000600259 KLK13Q9UKR3 277 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 CDH9Q9ULB4 789 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 CPQQ9Y646 472 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 CLIC4Q9Y696 253 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 WDFY3Q8IZQ1 3526 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 OBSL1O75147 1896 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 PTPRDP23468 1912 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 ANAPC1Q9H1A4 1944 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 NUP205Q92621 2012 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 THADAQ6YHU6 1953 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 A0A087X0B3 334 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 A0A1W2PQF6 199 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 E2F8A0AVK6 867 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 F8VP50 259 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 SCAMP3O14828 347 aaKnown RBP6.52□□□□□ -1.37
VRK3-220ENST00000600259 TRIM24O15164 1050 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 GREM1O60565 184 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 TACC1O75410 805 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 GJB3O75712 270 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 ALDH1A2O94788 518 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 PRPF6O94906 941 aaKnown RBP6.52□□□□□ -1.37
VRK3-220ENST00000600259 BMP15O95972 392 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 ZDHHC11BP0C7U3 371 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 GAP43P17677 238 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 PTPN1P18031 435 aaKnown RBP6.52□□□□□ -1.37
VRK3-220ENST00000600259 GABRG2P18507 467 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 HOXD12P35452 270 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 GRIK1P39086 918 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 GRIA2P42262 883 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 PPP3CCP48454 512 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 PGFP49763 221 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 PDE6CP51160 858 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 LMAN2Q12907 356 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 TAF10Q12962 218 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 LY6G5CQ5SRR4 150 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 SNX30Q5VWJ9 437 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 KIAA1211LQ6NV74 962 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 C4orf50Q6ZRC1 276 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 PAQR9Q6ZVX9 377 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 RAB44Q7Z6P3 723 aaPredicted RBP6.52□□□□□ -1.37
VRK3-220ENST00000600259 CBWD2Q8IUF1 395 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 SLC41A1Q8IVJ1 513 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 CHCHD4Q8N4Q1 142 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 KCNV2Q8TDN2 545 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 WHAMMQ8TF30 809 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 ZNF516Q92618 1163 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 HPDLQ96IR7 371 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 CLIC6Q96NY7 704 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 DUSP9Q99956 384 aaKnown RBP6.52□□□□□ -1.37
VRK3-220ENST00000600259 NUSAP1Q9BXS6 441 aaKnown RBP6.52□□□□□ -1.37
VRK3-220ENST00000600259 B3GNT5Q9BYG0 378 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 MRPL44Q9H9J2 332 aaKnown RBP6.52□□□□□ -1.37
VRK3-220ENST00000600259 SMPD4Q9NXE4 827 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 CFAP97Q9P2B7 532 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 STK17AQ9UEE5 414 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 SLC6A14Q9UN76 642 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 EXOC7Q9UPT5 735 aa6.52□□□□□ -1.37
VRK3-220ENST00000600259 STARD13Q9Y3M8 1113 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms