RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 IL21Q9HBE4 155 aa17.48■□□□□ 0.39
SHKBP1-219ENST00000599575 HCFC1R1Q9NWW0 138 aa17.48■□□□□ 0.39
SHKBP1-219ENST00000599575 AIPL1Q9NZN9 384 aa17.48■□□□□ 0.39
SHKBP1-219ENST00000599575 CDH7Q9ULB5 785 aa17.48■□□□□ 0.39
SHKBP1-219ENST00000599575 CAPN11Q9UMQ6 739 aa17.48■□□□□ 0.39
SHKBP1-219ENST00000599575 USP3Q9Y6I4 520 aa17.48■□□□□ 0.39
SHKBP1-219ENST00000599575 HHLA1C9JL84 531 aa17.47■□□□□ 0.39
SHKBP1-219ENST00000599575 BEST1O76090 585 aa17.47■□□□□ 0.39
SHKBP1-219ENST00000599575 GFPT2O94808 682 aa17.47■□□□□ 0.39
SHKBP1-219ENST00000599575 F11P03951 625 aa17.47■□□□□ 0.39
SHKBP1-219ENST00000599575 MYL4P12829 197 aa17.47■□□□□ 0.39
SHKBP1-219ENST00000599575 GABRR2P28476 465 aa17.47■□□□□ 0.39
SHKBP1-219ENST00000599575 GPD2P43304 727 aa17.47■□□□□ 0.39
SHKBP1-219ENST00000599575 ACADSBP45954 432 aa17.47■□□□□ 0.39
SHKBP1-219ENST00000599575 RPL34P49207 117 aaKnown RBP17.47■□□□□ 0.39
SHKBP1-219ENST00000599575 PLCB2Q00722 1185 aa17.47■□□□□ 0.39
SHKBP1-219ENST00000599575 SNX30Q5VWJ9 437 aa17.47■□□□□ 0.39
SHKBP1-219ENST00000599575 TRIM72Q6ZMU5 477 aa17.47■□□□□ 0.39
SHKBP1-219ENST00000599575 PIGZQ86VD9 579 aa17.47■□□□□ 0.39
SHKBP1-219ENST00000599575 ZDHHC14Q8IZN3 488 aa17.47■□□□□ 0.39
SHKBP1-219ENST00000599575 ARHGAP18Q8N392 663 aa17.47■□□□□ 0.39
SHKBP1-219ENST00000599575 GPR152Q8TDT2 470 aa17.47■□□□□ 0.39
SHKBP1-219ENST00000599575 MRPS31Q92665 395 aaKnown RBP17.47■□□□□ 0.39
SHKBP1-219ENST00000599575 NXPE3Q969Y0 559 aa17.47■□□□□ 0.39
SHKBP1-219ENST00000599575 MIS12Q9H081 205 aa17.47■□□□□ 0.39
SHKBP1-219ENST00000599575 TRPM5Q9NZQ8 1165 aa17.47■□□□□ 0.39
SHKBP1-219ENST00000599575 EPS15L1Q9UBC2 864 aa17.47■□□□□ 0.39
SHKBP1-219ENST00000599575 MAGED2Q9UNF1 606 aaPredicted RBP17.47■□□□□ 0.39
SHKBP1-219ENST00000599575 SCML2Q9UQR0 700 aa17.47■□□□□ 0.39
SHKBP1-219ENST00000599575 LUC7L2Q9Y383 392 aaKnown RBP17.47■□□□□ 0.39
SHKBP1-219ENST00000599575 BZW2Q9Y6E2 419 aaKnown RBP17.47■□□□□ 0.39
SHKBP1-219ENST00000599575 SART1O43290 800 aaKnown RBP17.46■□□□□ 0.39
SHKBP1-219ENST00000599575 FBXO21O94952 628 aa17.46■□□□□ 0.39
SHKBP1-219ENST00000599575 CDH5P33151 784 aaPredicted RBP17.46■□□□□ 0.39
SHKBP1-219ENST00000599575 TUBP50607 506 aa17.46■□□□□ 0.39
SHKBP1-219ENST00000599575 KCNQ1P51787 676 aa17.46■□□□□ 0.39
SHKBP1-219ENST00000599575 CDR1P51861 262 aa17.46■□□□□ 0.39
SHKBP1-219ENST00000599575 CDR2Q01850 454 aa17.46■□□□□ 0.39
SHKBP1-219ENST00000599575 SFMBT2Q5VUG0 894 aa17.46■□□□□ 0.39
SHKBP1-219ENST00000599575 SDHAF4Q5VUM1 108 aa17.46■□□□□ 0.39
SHKBP1-219ENST00000599575 PPP1R2P3Q6NXS1 205 aa17.46■□□□□ 0.39
SHKBP1-219ENST00000599575 GAREM2Q75VX8 874 aa17.46■□□□□ 0.39
SHKBP1-219ENST00000599575 CCDC186Q7Z3E2 898 aa17.46■□□□□ 0.39
SHKBP1-219ENST00000599575 MON1AQ86VX9 555 aa17.46■□□□□ 0.39
SHKBP1-219ENST00000599575 HS6ST3Q8IZP7 471 aa17.46■□□□□ 0.39
SHKBP1-219ENST00000599575 ZNF276Q8N554 614 aa17.46■□□□□ 0.39
SHKBP1-219ENST00000599575 TDRD5Q8NAT2 981 aaKnown RBP17.46■□□□□ 0.39
SHKBP1-219ENST00000599575 TMEM35BQ8NCS4 154 aa17.46■□□□□ 0.39
SHKBP1-219ENST00000599575 STKLD1Q8NE28 680 aa17.46■□□□□ 0.39
SHKBP1-219ENST00000599575 DDX1Q92499 740 aaKnown RBP17.46■□□□□ 0.39
SHKBP1-219ENST00000599575 FGF13Q92913 245 aa17.46■□□□□ 0.39
SHKBP1-219ENST00000599575 PDCL3Q9H2J4 239 aa17.46■□□□□ 0.39
SHKBP1-219ENST00000599575 ATXN3LQ9H3M9 355 aa17.46■□□□□ 0.39
SHKBP1-219ENST00000599575 LRRC4Q9HBW1 653 aa17.46■□□□□ 0.39
SHKBP1-219ENST00000599575 CNGB3Q9NQW8 809 aa17.46■□□□□ 0.39
SHKBP1-219ENST00000599575 LRRC53A6NM62 1247 aa17.45■□□□□ 0.38
SHKBP1-219ENST00000599575 LOC730098B7Z3J9 87 aa17.45■□□□□ 0.38
SHKBP1-219ENST00000599575 PNMA6AP0CW24 399 aaPredicted RBP17.45■□□□□ 0.38
SHKBP1-219ENST00000599575 LAMP2P13473 410 aa17.45■□□□□ 0.38
SHKBP1-219ENST00000599575 IL9P15248 144 aa17.45■□□□□ 0.38
SHKBP1-219ENST00000599575 PRKCIP41743 596 aa17.45■□□□□ 0.38
SHKBP1-219ENST00000599575 NTHL1P78549 312 aa17.45■□□□□ 0.38
SHKBP1-219ENST00000599575 TAF10Q12962 218 aa17.45■□□□□ 0.38
SHKBP1-219ENST00000599575 MTMR3Q13615 1198 aa17.45■□□□□ 0.38
SHKBP1-219ENST00000599575 SLC5A9Q2M3M2 681 aa17.45■□□□□ 0.38
SHKBP1-219ENST00000599575 PM20D1Q6GTS8 502 aa17.45■□□□□ 0.38
SHKBP1-219ENST00000599575 NPAS3Q8IXF0 933 aa17.45■□□□□ 0.38
SHKBP1-219ENST00000599575 DRC7Q8IY82 874 aa17.45■□□□□ 0.38
SHKBP1-219ENST00000599575 MSANTD4Q8NCY6 345 aa17.45■□□□□ 0.38
SHKBP1-219ENST00000599575 SHKBP1Q8TBC3 707 aa17.45■□□□□ 0.38
SHKBP1-219ENST00000599575 UBA3Q8TBC4 463 aa17.45■□□□□ 0.38
SHKBP1-219ENST00000599575 IRGQQ8WZA9 623 aa17.45■□□□□ 0.38
SHKBP1-219ENST00000599575 SECISBP2LQ93073 1101 aaKnown RBP17.45■□□□□ 0.38
SHKBP1-219ENST00000599575 FBXO32Q969P5 355 aa17.45■□□□□ 0.38
SHKBP1-219ENST00000599575 E2F7Q96AV8 911 aa17.45■□□□□ 0.38
SHKBP1-219ENST00000599575 CDK5RAP1Q96SZ6 601 aaKnown RBP17.45■□□□□ 0.38
SHKBP1-219ENST00000599575 TRIM62Q9BVG3 475 aa17.45■□□□□ 0.38
SHKBP1-219ENST00000599575 TASP1Q9H6P5 420 aa17.45■□□□□ 0.38
SHKBP1-219ENST00000599575 ZNF334Q9HCZ1 680 aaPredicted RBP17.45■□□□□ 0.38
SHKBP1-219ENST00000599575 TLR8Q9NR97 1041 aaKnown RBP17.45■□□□□ 0.38
SHKBP1-219ENST00000599575 NOCTQ9UK39 431 aaKnown RBP17.45■□□□□ 0.38
SHKBP1-219ENST00000599575 PTPRDP23468 1912 aa17.45■□□□□ 0.38
SHKBP1-219ENST00000599575 A0A1W2PRU2 124 aa17.44■□□□□ 0.38
SHKBP1-219ENST00000599575 ZNF840PA6NDX5 716 aa17.44■□□□□ 0.38
SHKBP1-219ENST00000599575 C19orf67A6NJJ6 358 aa17.44■□□□□ 0.38
SHKBP1-219ENST00000599575 MOSPD3O75425 235 aa17.44■□□□□ 0.38
SHKBP1-219ENST00000599575 ZBED1O96006 694 aa17.44■□□□□ 0.38
SHKBP1-219ENST00000599575 GYPCP04921 128 aa17.44■□□□□ 0.38
SHKBP1-219ENST00000599575 ZDHHC11BP0C7U3 371 aa17.44■□□□□ 0.38
SHKBP1-219ENST00000599575 GBP2P32456 591 aaPredicted RBP17.44■□□□□ 0.38
SHKBP1-219ENST00000599575 CCR2P41597 374 aa17.44■□□□□ 0.38
SHKBP1-219ENST00000599575 USP46P62068 366 aa17.44■□□□□ 0.38
SHKBP1-219ENST00000599575 ZP2Q05996 745 aa17.44■□□□□ 0.38
SHKBP1-219ENST00000599575 MTSS1LQ765P7 747 aa17.44■□□□□ 0.38
SHKBP1-219ENST00000599575 GET4Q7L5D6 327 aaPredicted RBP17.44■□□□□ 0.38
SHKBP1-219ENST00000599575 IRF2BP2Q7Z5L9 587 aa17.44■□□□□ 0.38
SHKBP1-219ENST00000599575 TMEM150AQ86TG1 271 aa17.44■□□□□ 0.38
SHKBP1-219ENST00000599575 TADA2BQ86TJ2 420 aa17.44■□□□□ 0.38
SHKBP1-219ENST00000599575 TMEM110Q86TL2 294 aa17.44■□□□□ 0.38
SHKBP1-219ENST00000599575 NOP9Q86U38 636 aaKnown RBP17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms