RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 MFSD1Q9H3U5 465 aa17.09■□□□□ 0.33
TRIM28-213ENST00000598355 BRD9Q9H8M2 597 aa17.09■□□□□ 0.33
TRIM28-213ENST00000598355 TDP1Q9NUW8 608 aa17.09■□□□□ 0.33
TRIM28-213ENST00000598355 CACNA1IQ9P0X4 2223 aa17.09■□□□□ 0.33
TRIM28-213ENST00000598355 KIAA1549LQ6ZVL6 1849 aa17.08■□□□□ 0.33
TRIM28-213ENST00000598355 GTPBP10A4D1E9 387 aaKnown RBP17.08■□□□□ 0.32
TRIM28-213ENST00000598355 C2orf78A6NCI8 922 aa17.08■□□□□ 0.32
TRIM28-213ENST00000598355 YWHAQP27348 245 aa17.08■□□□□ 0.32
TRIM28-213ENST00000598355 ADORA2BP29275 332 aa17.08■□□□□ 0.32
TRIM28-213ENST00000598355 CETN1Q12798 172 aa17.08■□□□□ 0.32
TRIM28-213ENST00000598355 ARHGAP29Q52LW3 1261 aa17.08■□□□□ 0.32
TRIM28-213ENST00000598355 ZNF394Q53GI3 561 aa17.08■□□□□ 0.32
TRIM28-213ENST00000598355 GPRIN1Q7Z2K8 1008 aa17.08■□□□□ 0.32
TRIM28-213ENST00000598355 ZNF687Q8N1G0 1237 aa17.08■□□□□ 0.32
TRIM28-213ENST00000598355 PJA1Q8NG27 643 aa17.08■□□□□ 0.32
TRIM28-213ENST00000598355 SCAMP5Q8TAC9 235 aa17.08■□□□□ 0.32
TRIM28-213ENST00000598355 KAT5Q92993 513 aa17.08■□□□□ 0.32
TRIM28-213ENST00000598355 SHDQ96IW2 340 aa17.08■□□□□ 0.32
TRIM28-213ENST00000598355 OSBPL6Q9BZF3 934 aa17.08■□□□□ 0.32
TRIM28-213ENST00000598355 DNAI2Q9GZS0 605 aa17.08■□□□□ 0.32
TRIM28-213ENST00000598355 SMG9Q9H0W8 520 aaKnown RBP17.08■□□□□ 0.32
TRIM28-213ENST00000598355 HEBP1Q9NRV9 189 aa17.08■□□□□ 0.32
TRIM28-213ENST00000598355 TRPM5Q9NZQ8 1165 aa17.08■□□□□ 0.32
TRIM28-213ENST00000598355 DLGAP2Q9P1A6 1054 aa17.08■□□□□ 0.32
TRIM28-213ENST00000598355 ARHGAP26Q9UNA1 814 aa17.08■□□□□ 0.32
TRIM28-213ENST00000598355 CNTN6Q9UQ52 1028 aa17.08■□□□□ 0.32
TRIM28-213ENST00000598355 TRAV19A0A0A6YYK7 116 aa17.07■□□□□ 0.32
TRIM28-213ENST00000598355 DPYSL4O14531 572 aa17.07■□□□□ 0.32
TRIM28-213ENST00000598355 ZNF263O14978 683 aa17.07■□□□□ 0.32
TRIM28-213ENST00000598355 USP17L7P0C7H9 530 aa17.07■□□□□ 0.32
TRIM28-213ENST00000598355 TUBP50607 506 aa17.07■□□□□ 0.32
TRIM28-213ENST00000598355 PDE6CP51160 858 aa17.07■□□□□ 0.32
TRIM28-213ENST00000598355 ZNF132P52740 706 aa17.07■□□□□ 0.32
TRIM28-213ENST00000598355 MAP3K7CLP57077 242 aa17.07■□□□□ 0.32
TRIM28-213ENST00000598355 SLC7A9P82251 487 aa17.07■□□□□ 0.32
TRIM28-213ENST00000598355 PLCB2Q00722 1185 aa17.07■□□□□ 0.32
TRIM28-213ENST00000598355 SMYD5Q6GMV2 418 aa17.07■□□□□ 0.32
TRIM28-213ENST00000598355 ARHGEF19Q8IW93 802 aa17.07■□□□□ 0.32
TRIM28-213ENST00000598355 KIAA1958Q8N8K9 716 aa17.07■□□□□ 0.32
TRIM28-213ENST00000598355 EHBP1Q8NDI1 1231 aa17.07■□□□□ 0.32
TRIM28-213ENST00000598355 FLCNQ8NFG4 579 aa17.07■□□□□ 0.32
TRIM28-213ENST00000598355 FBXO32Q969P5 355 aa17.07■□□□□ 0.32
TRIM28-213ENST00000598355 MSANTD3Q96H12 275 aa17.07■□□□□ 0.32
TRIM28-213ENST00000598355 PRRX2Q99811 253 aa17.07■□□□□ 0.32
TRIM28-213ENST00000598355 FAM83CQ9BQN1 747 aa17.07■□□□□ 0.32
TRIM28-213ENST00000598355 DUSP16Q9BY84 665 aa17.07■□□□□ 0.32
TRIM28-213ENST00000598355 INTS2Q9H0H0 1204 aaKnown RBP17.07■□□□□ 0.32
TRIM28-213ENST00000598355 KANSL1LA0AUZ9 987 aa17.06■□□□□ 0.32
TRIM28-213ENST00000598355 PI15O43692 258 aa17.06■□□□□ 0.32
TRIM28-213ENST00000598355 PAEPP09466 180 aa17.06■□□□□ 0.32
TRIM28-213ENST00000598355 GLULP15104 373 aa17.06■□□□□ 0.32
TRIM28-213ENST00000598355 ZXDBP98169 803 aa17.06■□□□□ 0.32
TRIM28-213ENST00000598355 LRMPQ12912 555 aa17.06■□□□□ 0.32
TRIM28-213ENST00000598355 CCDC183Q5T5S1 534 aa17.06■□□□□ 0.32
TRIM28-213ENST00000598355 TRIM65Q6PJ69 517 aa17.06■□□□□ 0.32
TRIM28-213ENST00000598355 TPRG1Q6ZUI0 275 aa17.06■□□□□ 0.32
TRIM28-213ENST00000598355 TTC30AQ86WT1 665 aa17.06■□□□□ 0.32
TRIM28-213ENST00000598355 FAM114A1Q8IWE2 563 aa17.06■□□□□ 0.32
TRIM28-213ENST00000598355 CCDC105Q8IYK2 499 aa17.06■□□□□ 0.32
TRIM28-213ENST00000598355 PPM1KQ8N3J5 372 aa17.06■□□□□ 0.32
TRIM28-213ENST00000598355 ARL14EPQ8N8R7 260 aaPredicted RBP17.06■□□□□ 0.32
TRIM28-213ENST00000598355 PRSS33Q8NF86 280 aa17.06■□□□□ 0.32
TRIM28-213ENST00000598355 JAKMIP2Q96AA8 810 aa17.06■□□□□ 0.32
TRIM28-213ENST00000598355 KREMEN1Q96MU8 473 aa17.06■□□□□ 0.32
TRIM28-213ENST00000598355 FBXO44Q9H4M3 255 aa17.06■□□□□ 0.32
TRIM28-213ENST00000598355 TRPC7Q9HCX4 862 aa17.06■□□□□ 0.32
TRIM28-213ENST00000598355 LTB4R2Q9NPC1 389 aa17.06■□□□□ 0.32
TRIM28-213ENST00000598355 USP3Q9Y6I4 520 aa17.06■□□□□ 0.32
TRIM28-213ENST00000598355 MYOFQ9NZM1 2061 aa17.05■□□□□ 0.32
TRIM28-213ENST00000598355 O00370 1275 aa17.05■□□□□ 0.32
TRIM28-213ENST00000598355 CKMP06732 381 aa17.05■□□□□ 0.32
TRIM28-213ENST00000598355 KIF11P52732 1056 aa17.05■□□□□ 0.32
TRIM28-213ENST00000598355 MAN2A1Q16706 1144 aa17.05■□□□□ 0.32
TRIM28-213ENST00000598355 PKDCCQ504Y2 493 aa17.05■□□□□ 0.32
TRIM28-213ENST00000598355 RAB41Q5JT25 222 aa17.05■□□□□ 0.32
TRIM28-213ENST00000598355 MIIPQ5JXC2 388 aa17.05■□□□□ 0.32
TRIM28-213ENST00000598355 GPIHBP1Q8IV16 184 aa17.05■□□□□ 0.32
TRIM28-213ENST00000598355 YAF2Q8IY57 180 aa17.05■□□□□ 0.32
TRIM28-213ENST00000598355 ANKRD52Q8NB46 1076 aa17.05■□□□□ 0.32
TRIM28-213ENST00000598355 ENOX1Q8TC92 643 aaKnown RBP17.05■□□□□ 0.32
TRIM28-213ENST00000598355 ZFRQ96KR1 1074 aaKnown RBP17.05■□□□□ 0.32
TRIM28-213ENST00000598355 HEXIM2Q96MH2 286 aaKnown RBP17.05■□□□□ 0.32
TRIM28-213ENST00000598355 CYP2S1Q96SQ9 504 aa17.05■□□□□ 0.32
TRIM28-213ENST00000598355 UBXN6Q9BZV1 441 aa17.05■□□□□ 0.32
TRIM28-213ENST00000598355 FOXQ1Q9C009 403 aa17.05■□□□□ 0.32
TRIM28-213ENST00000598355 RNF38Q9H0F5 515 aa17.05■□□□□ 0.32
TRIM28-213ENST00000598355 GMIPQ9P107 970 aa17.05■□□□□ 0.32
TRIM28-213ENST00000598355 TMEM63CQ9P1W3 806 aa17.05■□□□□ 0.32
TRIM28-213ENST00000598355 SCML2Q9UQR0 700 aa17.05■□□□□ 0.32
TRIM28-213ENST00000598355 GALR2O43603 387 aaPredicted RBP17.04■□□□□ 0.32
TRIM28-213ENST00000598355 VDRP11473 427 aa17.04■□□□□ 0.32
TRIM28-213ENST00000598355 HDCP19113 662 aa17.04■□□□□ 0.32
TRIM28-213ENST00000598355 TARSP26639 723 aaKnown RBP17.04■□□□□ 0.32
TRIM28-213ENST00000598355 BCAT1P54687 386 aa17.04■□□□□ 0.32
TRIM28-213ENST00000598355 TCF15Q12870 199 aa17.04■□□□□ 0.32
TRIM28-213ENST00000598355 MTF1Q14872 753 aa17.04■□□□□ 0.32
TRIM28-213ENST00000598355 SGO2Q562F6 1265 aa17.04■□□□□ 0.32
TRIM28-213ENST00000598355 CDKAL1Q5VV42 579 aa17.04■□□□□ 0.32
TRIM28-213ENST00000598355 C1orf228Q6PIY5 440 aa17.04■□□□□ 0.32
TRIM28-213ENST00000598355 CCDC186Q7Z3E2 898 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms